Literature DB >> 23885095

Minireview: Long noncoding RNAs: new "links" between gene expression and cellular outcomes in endocrinology.

Miao Sun1, W Lee Kraus.   

Abstract

Recent advances in sequencing technologies have revealed that the genome is extensively transcribed, yielding a large repertoire of noncoding RNAs. These include long noncoding RNAs (lncRNAs), mRNA-like molecules that do not code for proteins, which are emerging as a new class of RNAs that play important roles in a variety of cellular processes. Ongoing studies are revealing new insights about lncRNAs, including their physiological functions, disease relationships, and molecular mechanisms of action. Characterized lncRNAs have been shown to interact with and modulate the activity of other RNAs and protein partners, leading to alterations in transcriptional and posttranscriptional regulatory processes. In this review, we summarize the key features of lncRNAs, their molecular mechanisms of action, biological functions, and therapeutic implications, particularly as they apply to the field of molecular endocrinology. In addition, we provide a brief overview of how molecular biologists are beginning to probe the identity, mechanisms, and functions of this emerging class of RNA molecules.

Mesh:

Substances:

Year:  2013        PMID: 23885095      PMCID: PMC3753426          DOI: 10.1210/me.2013-1113

Source DB:  PubMed          Journal:  Mol Endocrinol        ISSN: 0888-8809


  99 in total

Review 1.  Steroid Receptor RNA Activator - A nuclear receptor coregulator with multiple partners: Insights and challenges.

Authors:  Shane M Colley; Peter J Leedman
Journal:  Biochimie       Date:  2011-07-27       Impact factor: 4.079

2.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

3.  SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer.

Authors:  Marjan E Askarian-Amiri; Joanna Crawford; Juliet D French; Chanel E Smart; Martin A Smith; Michael B Clark; Kelin Ru; Tim R Mercer; Ella R Thompson; Sunil R Lakhani; Ana C Vargas; Ian G Campbell; Melissa A Brown; Marcel E Dinger; John S Mattick
Journal:  RNA       Date:  2011-04-01       Impact factor: 4.942

Review 4.  The emergence of lncRNAs in cancer biology.

Authors:  John R Prensner; Arul M Chinnaiyan
Journal:  Cancer Discov       Date:  2011-10       Impact factor: 39.397

5.  Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines.

Authors:  Florent Hube; Jimin Guo; Shilpa Chooniedass-Kothari; Charlton Cooper; Mohammad K Hamedani; Alexander A Dibrov; Anne A A Blanchard; Xuemei Wang; George Deng; Yvonne Myal; Etienne Leygue
Journal:  DNA Cell Biol       Date:  2006-07       Impact factor: 3.311

6.  Dax-1 and steroid receptor RNA activator (SRA) function as transcriptional coactivators for steroidogenic factor 1 in steroidogenesis.

Authors:  Bin Xu; Wei-Hsiung Yang; Isabelle Gerin; Chang-Deng Hu; Gary D Hammer; Ronald J Koenig
Journal:  Mol Cell Biol       Date:  2009-02-02       Impact factor: 4.272

7.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.

Authors:  Mitchell Guttman; Ido Amit; Manuel Garber; Courtney French; Michael F Lin; David Feldser; Maite Huarte; Or Zuk; Bryce W Carey; John P Cassady; Moran N Cabili; Rudolf Jaenisch; Tarjei S Mikkelsen; Tyler Jacks; Nir Hacohen; Bradley E Bernstein; Manolis Kellis; Aviv Regev; John L Rinn; Eric S Lander
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

8.  Braveheart, a long noncoding RNA required for cardiovascular lineage commitment.

Authors:  Carla A Klattenhoff; Johanna C Scheuermann; Lauren E Surface; Robert K Bradley; Paul A Fields; Matthew L Steinhauser; Huiming Ding; Vincent L Butty; Lillian Torrey; Simon Haas; Ryan Abo; Mohammadsharif Tabebordbar; Richard T Lee; Christopher B Burge; Laurie A Boyer
Journal:  Cell       Date:  2013-01-24       Impact factor: 41.582

9.  A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells.

Authors:  Per Johnsson; Amanda Ackley; Linda Vidarsdottir; Weng-Onn Lui; Martin Corcoran; Dan Grandér; Kevin V Morris
Journal:  Nat Struct Mol Biol       Date:  2013-02-24       Impact factor: 15.369

10.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

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  18 in total

1.  Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients.

Authors:  Xin Huang; Cuifang Hao; Hongchu Bao; Meimei Wang; Huangguan Dai
Journal:  J Assist Reprod Genet       Date:  2015-12-09       Impact factor: 3.412

Review 2.  From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease.

Authors:  Miao Sun; W Lee Kraus
Journal:  Endocr Rev       Date:  2014-11-26       Impact factor: 19.871

Review 3.  Long non-coding RNA regulation of reproduction and development.

Authors:  David H Taylor; Erin Tsi-Jia Chu; Roman Spektor; Paul D Soloway
Journal:  Mol Reprod Dev       Date:  2015-10-30       Impact factor: 2.609

Review 4.  LncRNAs: key players and novel insights into cervical cancer.

Authors:  Li Peng; Xiaoqing Yuan; Binyuan Jiang; Zaili Tang; Guan-Cheng Li
Journal:  Tumour Biol       Date:  2015-12-29

5.  Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells.

Authors:  Miao Sun; Shrikanth S Gadad; Dae-Seok Kim; W Lee Kraus
Journal:  Mol Cell       Date:  2015-07-30       Impact factor: 17.970

Review 6.  Long Noncoding RNAs in Digestive System Malignancies: A Novel Class of Cancer Biomarkers and Therapeutic Targets?

Authors:  Athina Kladi-Skandali; Kleita Michaelidou; Andreas Scorilas; Konstantinos Mavridis
Journal:  Gastroenterol Res Pract       Date:  2015-04-29       Impact factor: 2.260

7.  Breeding scheme and maternal small RNAs affect the efficiency of transgenerational inheritance of a paramutation in mice.

Authors:  Shuiqiao Yuan; Daniel Oliver; Andrew Schuster; Huili Zheng; Wei Yan
Journal:  Sci Rep       Date:  2015-03-18       Impact factor: 4.379

8.  Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain.

Authors:  Siling Liu; Zhengbo Wang; Dong Chen; Bowen Zhang; Ren-Rong Tian; Jing Wu; Ying Zhang; Kaiyu Xu; Liu-Meng Yang; Chao Cheng; Jian Ma; Longbao Lv; Yong-Tang Zheng; Xintian Hu; Yi Zhang; Xiangting Wang; Jiali Li
Journal:  Genome Res       Date:  2017-07-07       Impact factor: 9.043

Review 9.  Intersecting transcriptomic profiling technologies and long non-coding RNA function in lung adenocarcinoma: discovery, mechanisms, and therapeutic applications.

Authors:  Jonathan Castillo; Theresa R Stueve; Crystal N Marconett
Journal:  Oncotarget       Date:  2017-06-09

10.  The landscape of DNA methylation-mediated regulation of long non-coding RNAs in breast cancer.

Authors:  Chunlong Zhang; Xinyu Wang; Xuecang Li; Ning Zhao; Yihan Wang; Xiaole Han; Ce Ci; Jian Zhang; Meng Li; Yan Zhang
Journal:  Oncotarget       Date:  2017-05-08
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