Literature DB >> 23876728

Optimizing Savitzky-Golay parameters for improving spectral resolution and quantification in infrared spectroscopy.

Boris Zimmermann1, Achim Kohler.   

Abstract

Calculating derivatives of spectral data by the Savitzky-Golay (SG) numerical algorithm is often used as a preliminary preprocessing step to resolve overlapping signals, enhance signal properties, and suppress unwanted spectral features that arise due to nonideal instrument and sample properties. Addressing these issues, a study of the simulated and measured infrared data by partial least-squares regression has been conducted. The simulated data sets were modeled by considering a range of undesired chemical and physical spectral anomalies and variations that can occur in a measured spectrum, such as baseline variations, noise, and scattering effects. The study has demonstrated the importance of the optimization of the SG parameters during the conversion of spectra into derivative form, specifically window size and polynomial order of the fitting curve. A specific optimal window size is associated with an exact component of the system being estimated, and this window size does not necessarily apply for some other component present in the system. Since the optimization procedure can be time-consuming, as a rough guideline spectral noise level can be used for assessment of window size. Moreover, it has been demonstrated that, when the extended multiplicative signal correction (EMSC) is used alongside the SG procedure, the derivative treatment of data by the SG algorithm must precede the EMSC normalization.

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Year:  2013        PMID: 23876728     DOI: 10.1366/12-06723

Source DB:  PubMed          Journal:  Appl Spectrosc        ISSN: 0003-7028            Impact factor:   2.388


  38 in total

1.  Evaluating the effects of causes of death on postmortem interval estimation by ATR-FTIR spectroscopy.

Authors:  Kai Zhang; Qi Wang; Ruina Liu; Xin Wei; Zhouru Li; Shuanliang Fan; Zhenyuan Wang
Journal:  Int J Legal Med       Date:  2019-03-25       Impact factor: 2.686

2.  Simultaneous elucidation of antibiotic mechanism of action and potency with high-throughput Fourier-transform infrared (FTIR) spectroscopy and machine learning.

Authors:  Bernardo Ribeiro da Cunha; Luís P Fonseca; Cecília R C Calado
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-14       Impact factor: 4.813

3.  Phytoplankton growth rate modelling: can spectroscopic cell chemotyping be superior to physiological predictors?

Authors:  Andrea Fanesi; Heiko Wagner; Christian Wilhelm
Journal:  Proc Biol Sci       Date:  2017-02-08       Impact factor: 5.349

4.  Species identification of bloodstains by ATR-FTIR spectroscopy: the effects of bloodstain age and the deposition environment.

Authors:  Hancheng Lin; Yinming Zhang; Qi Wang; Bing Li; Shuanliang Fan; Zhenyuan Wang
Journal:  Int J Legal Med       Date:  2017-08-18       Impact factor: 2.686

5.  Temperature- and Nutrients-Induced Phenotypic Changes of Antarctic Green Snow Bacteria Probed by High-Throughput FTIR Spectroscopy.

Authors:  Margarita Smirnova; Valeria Tafintseva; Achim Kohler; Uladzislau Miamin; Volha Shapaval
Journal:  Biology (Basel)       Date:  2022-06-09

6.  Postmortem diagnosis of fatal hypothermia/hyperthermia by spectrochemical analysis of plasma.

Authors:  Hancheng Lin; Donghua Zou; Yiwen Luo; Lei Wang; Zhong Zhang; Ji Zhang; Yijiu Chen; Zhenyuan Wang; Ping Huang
Journal:  Forensic Sci Med Pathol       Date:  2019-05-03       Impact factor: 2.007

7.  Oleaginous yeasts respond differently to carbon sources present in lignocellulose hydrolysate.

Authors:  Jule Brandenburg; Johanna Blomqvist; Volha Shapaval; Achim Kohler; Sabine Sampels; Mats Sandgren; Volkmar Passoth
Journal:  Biotechnol Biofuels       Date:  2021-05-29       Impact factor: 6.040

8.  A Multiscale Vibrational Spectroscopic Approach for Identification and Biochemical Characterization of Pollen.

Authors:  Murat Bağcıoğlu; Boris Zimmermann; Achim Kohler
Journal:  PLoS One       Date:  2015-09-16       Impact factor: 3.240

9.  Chemical characterization and identification of Pinaceae pollen by infrared microspectroscopy.

Authors:  Boris Zimmermann
Journal:  Planta       Date:  2017-09-14       Impact factor: 4.116

10.  Infrared spectroscopy of pollen identifies plant species and genus as well as environmental conditions.

Authors:  Boris Zimmermann; Achim Kohler
Journal:  PLoS One       Date:  2014-04-18       Impact factor: 3.240

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