Literature DB >> 23875797

The spatial organization of the human genome.

Wendy A Bickmore1.   

Abstract

In vivo, the human genome functions as a complex, folded, three-dimensional chromatin polymer. Understanding how the human genome is spatially organized and folded inside the cell nucleus is therefore central to understanding how genes are regulated in normal development and dysregulated in disease. Established light microscopy-based approaches and more recent molecular chromosome conformation capture methods are now combining to give us unprecedented insight into this fascinating aspect of human genomics.

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Year:  2013        PMID: 23875797     DOI: 10.1146/annurev-genom-091212-153515

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  153 in total

1.  Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

Authors:  Pierre J Fabre; Alexander Benke; Elisabeth Joye; Thi Hanh Nguyen Huynh; Suliana Manley; Denis Duboule
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

Review 2.  Coming to terms with chromatin structure.

Authors:  Liron Even-Faitelson; Vahideh Hassan-Zadeh; Zahra Baghestani; David P Bazett-Jones
Journal:  Chromosoma       Date:  2015-07-30       Impact factor: 4.316

3.  Reorganization of the interchromosomal network during keratinocyte differentiation.

Authors:  Nitasha Sehgal; Brandon Seifert; Hu Ding; Zihe Chen; Branislav Stojkovic; Sambit Bhattacharya; Jinhui Xu; Ronald Berezney
Journal:  Chromosoma       Date:  2015-10-21       Impact factor: 4.316

Review 4.  Long non-coding RNAs in corticogenesis: deciphering the non-coding code of the brain.

Authors:  Julieta Aprea; Federico Calegari
Journal:  EMBO J       Date:  2015-10-29       Impact factor: 11.598

5.  Design (and) principles of nuclear dynamics in Stockholm.

Authors:  Yaron Shav-Tal; Jan Lammerding
Journal:  Nucleus       Date:  2015       Impact factor: 4.197

6.  Three-dimensional architecture of tandem repeats in chicken interphase nucleus.

Authors:  Antonina Maslova; Anna Zlotina; Nadezhda Kosyakova; Marina Sidorova; Alla Krasikova
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

7.  Identification of Gene Positioning Factors Using High-Throughput Imaging Mapping.

Authors:  Sigal Shachar; Ty C Voss; Gianluca Pegoraro; Nicholas Sciascia; Tom Misteli
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

8.  CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

Authors:  Zhonghui Tang; Oscar Junhong Luo; Xingwang Li; Meizhen Zheng; Jacqueline Jufen Zhu; Przemyslaw Szalaj; Pawel Trzaskoma; Adriana Magalska; Jakub Wlodarczyk; Blazej Ruszczycki; Paul Michalski; Emaly Piecuch; Ping Wang; Danjuan Wang; Simon Zhongyuan Tian; May Penrad-Mobayed; Laurent M Sachs; Xiaoan Ruan; Chia-Lin Wei; Edison T Liu; Grzegorz M Wilczynski; Dariusz Plewczynski; Guoliang Li; Yijun Ruan
Journal:  Cell       Date:  2015-12-10       Impact factor: 41.582

9.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

10.  Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment.

Authors:  Celeste D Rosencrance; Haneen N Ammouri; Qi Yu; Tiffany Ge; Emily J Rendleman; Stacy A Marshall; Kyle P Eagen
Journal:  Mol Cell       Date:  2020-04-02       Impact factor: 17.970

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