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Literature DB >> 23870275

Quantitative analysis of three-dimensional fluorescence localization microscopy data.

Dylan M Owen¹, David J Williamson, Lies Boelen, Astrid Magenau, Jérémie Rossy, Katharina Gaus.

Abstract

Identifying the three-dimensional molecular organization of subcellular organelles in intact cells has been challenging to date. Here we present an analysis approach for three-dimensional localization microscopy that can not only identify subcellular objects below the diffraction limit but also quantify their shape and volume. This approach is particularly useful to map the topography of the plasma membrane and measure protein distribution within an undulating membrane.

Mesh：

Year: 2013 PMID： 23870275 PMCID： PMC3714931 DOI： 10.1016/j.bpj.2013.05.063

Source DB: PubMed Journal: Biophys J ISSN： 0006-3495 Impact factor: 4.033

17 in total

1. Dynamics of subsynaptic vesicles and surface microclusters at the immunological synapse.

Authors: Marco A Purbhoo; Hebin Liu; Stephane Oddos; Dylan M Owen; Mark A A Neil; Sophie V Pageon; Paul M W French; Christopher E Rudd; Daniel M Davis
Journal: Sci Signal Date: 2010-05-11 Impact factor: 8.192

2. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).

Authors: Michael J Rust; Mark Bates; Xiaowei Zhuang
Journal: Nat Methods Date: 2006-08-09 Impact factor: 28.547

3. Imaging intracellular fluorescent proteins at nanometer resolution.

Authors: Eric Betzig; George H Patterson; Rachid Sougrat; O Wolf Lindwasser; Scott Olenych; Juan S Bonifacino; Michael W Davidson; Jennifer Lippincott-Schwartz; Harald F Hess
Journal: Science Date: 2006-08-10 Impact factor: 47.728

4. Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes.

Authors: Sang-Hee Shim; Chenglong Xia; Guisheng Zhong; Hazen P Babcock; Joshua C Vaughan; Bo Huang; Xun Wang; Cheng Xu; Guo-Qiang Bi; Xiaowei Zhuang
Journal: Proc Natl Acad Sci U S A Date: 2012-08-13 Impact factor: 11.205

5. Pre-existing clusters of the adaptor Lat do not participate in early T cell signaling events.

Authors: David J Williamson; Dylan M Owen; Jérémie Rossy; Astrid Magenau; Matthias Wehrmann; J Justin Gooding; Katharina Gaus
Journal: Nat Immunol Date: 2011-06-05 Impact factor: 25.606

6. Functional nanoscale organization of signaling molecules downstream of the T cell antigen receptor.

Authors: Eilon Sherman; Valarie Barr; Suliana Manley; George Patterson; Lakshmi Balagopalan; Itoro Akpan; Carole K Regan; Robert K Merrill; Connie L Sommers; Jennifer Lippincott-Schwartz; Lawrence E Samelson
Journal: Immunity Date: 2011-11-04 Impact factor: 31.745

7. Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis.

Authors: Prabuddha Sengupta; Tijana Jovanovic-Talisman; Dunja Skoko; Malte Renz; Sarah L Veatch; Jennifer Lippincott-Schwartz
Journal: Nat Methods Date: 2011-09-18 Impact factor: 28.547

8. PALM imaging and cluster analysis of protein heterogeneity at the cell surface.

Authors: Dylan M Owen; Carles Rentero; Jérémie Rossy; Astrid Magenau; David Williamson; Macarena Rodriguez; Katharina Gaus
Journal: J Biophotonics Date: 2010-07 Impact factor: 3.207

9. Conformational states of the kinase Lck regulate clustering in early T cell signaling.

Authors: Jérémie Rossy; Dylan M Owen; David J Williamson; Zhengmin Yang; Katharina Gaus
Journal: Nat Immunol Date: 2012-12-02 Impact factor: 25.606

10. Quantitative photo activated localization microscopy: unraveling the effects of photoblinking.

Authors: Paolo Annibale; Stefano Vanni; Marco Scarselli; Ursula Rothlisberger; Aleksandra Radenovic
Journal: PLoS One Date: 2011-07-26 Impact factor: 3.240

12 in total

1. Actin foci facilitate activation of the phospholipase C-γ in primary T lymphocytes via the WASP pathway.

Authors: Sudha Kumari; David Depoil; Roberta Martinelli; Edward Judokusumo; Guillaume Carmona; Frank B Gertler; Lance C Kam; Christopher V Carman; Janis K Burkhardt; Darrell J Irvine; Michael L Dustin
Journal: Elife Date: 2015-03-11 Impact factor: 8.140

2. A Bayesian cluster analysis method for single-molecule localization microscopy data.

Authors: Juliette Griffié; Michael Shannon; Claire L Bromley; Lies Boelen; Garth L Burn; David J Williamson; Nicholas A Heard; Andrew P Cope; Dylan M Owen; Patrick Rubin-Delanchy
Journal: Nat Protoc Date: 2016-11-17 Impact factor: 13.491

3. Method for co-cluster analysis in multichannel single-molecule localisation data.

Authors: Jérémie Rossy; Edward Cohen; Katharina Gaus; Dylan M Owen
Journal: Histochem Cell Biol Date: 2014-03-19 Impact factor: 4.304

Review 4. Subdiffractive microscopy: techniques, applications, and challenges.

Authors: Brian R Long; Danielle C Robinson; Haining Zhong
Journal: Wiley Interdiscip Rev Syst Biol Med Date: 2014-01-17

5. Bioimaging of Mesenchymal Stem Cells Spatial Distribution and Interactions with 3D In Vitro Tumor Spheroids.

Authors: Luís P Ferreira; Vítor M Gaspar; João F Mano
Journal: Methods Mol Biol Date: 2021

Review 6. Progress in quantitative single-molecule localization microscopy.

Authors: H Deschout; A Shivanandan; P Annibale; M Scarselli; A Radenovic
Journal: Histochem Cell Biol Date: 2014-04-20 Impact factor: 4.304

7. Coordinate-based co-localization-mediated analysis of arrestin clustering upon stimulation of the C-C chemokine receptor 5 with RANTES/CCL5 analogues.

Authors: Laura Tarancón Díez; Claudia Bönsch; Sebastian Malkusch; Zinnia Truan; Mihaela Munteanu; Mike Heilemann; Oliver Hartley; Ulrike Endesfelder; Alexandre Fürstenberg
Journal: Histochem Cell Biol Date: 2014-03-13 Impact factor: 4.304