Literature DB >> 23870261

Growth of large and highly ordered 2D crystals of a K⁺ channel, structural role of lipidic environment.

Rita De Zorzi1, William V Nicholson, Jean-Michel Guigner, Françoise Erne-Brand, Catherine Vénien-Bryan.   

Abstract

2D crystallography has proven to be an excellent technique to determine the 3D structure of membrane proteins. Compared to 3D crystallography, it has the advantage of visualizing the protein in an environment closer to the native one. However, producing good 2D crystals is still a challenge and little statistical knowledge can be gained from literature. Here, we present a thorough screening of 2D crystallization conditions for a prokaryotic inwardly rectifying potassium channel (>130 different conditions). Key parameters leading to very large and well-organized 2D crystals are discussed. In addition, the problem of formation of multilayers during the growth of 2D crystals is also addressed. An intermediate resolution projection map of KirBac3.1 at 6 Å is presented, which sheds (to our knowledge) new light on the structure of this channel in a lipid environment.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23870261      PMCID: PMC3714874          DOI: 10.1016/j.bpj.2013.05.054

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Mechanism of formation of multilayered 2D crystals of the enzyme IIC-mannitol transporter.

Authors:  Marc C A Stuart; Roman I Koning; Gert T Oostergetel; Alain Brisson
Journal:  Biochim Biophys Acta       Date:  2004-05-27

2.  Electron crystallography and aquaporins.

Authors:  Andreas D Schenk; Richard K Hite; Andreas Engel; Yoshinori Fujiyoshi; Thomas Walz
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

3.  Preparation of 2D crystals of membrane proteins for high-resolution electron crystallography data collection.

Authors:  Priyanka D Abeyrathne; Mohamed Chami; Radosav S Pantelic; Kenneth N Goldie; Henning Stahlberg
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Two different conformational states of the KirBac3.1 potassium channel revealed by electron crystallography.

Authors:  Anling Kuo; Carmen Domene; Louise N Johnson; Declan A Doyle; Catherine Vénien-Bryan
Journal:  Structure       Date:  2005-10       Impact factor: 5.006

5.  2dx--user-friendly image processing for 2D crystals.

Authors:  Bryant Gipson; Xiangyan Zeng; Zi Yan Zhang; Henning Stahlberg
Journal:  J Struct Biol       Date:  2006-09-01       Impact factor: 2.867

6.  2dx_merge: data management and merging for 2D crystal images.

Authors:  Bryant Gipson; Xiangyan Zeng; Henning Stahlberg
Journal:  J Struct Biol       Date:  2007-09-25       Impact factor: 2.867

7.  Orthorhombic two-dimensional crystal form of purple membrane.

Authors:  H Michel; D Oesterhelt; R Henderson
Journal:  Proc Natl Acad Sci U S A       Date:  1980-01       Impact factor: 11.205

8.  Two-dimensional crystallization conditions of human leukotriene C4 synthase requiring adjustment of a particularly large combination of specific parameters.

Authors:  G Zhao; M C Johnson; J R Schnell; Y Kanaoka; W Haase; D Irikura; B K Lam; I Schmidt-Krey
Journal:  J Struct Biol       Date:  2009-11-10       Impact factor: 2.867

9.  Assembly of 2-D membrane protein crystals: dynamics, crystal order, and fidelity of structure analysis by electron microscopy.

Authors:  A Engel; A Hoenger; A Hefti; C Henn; R C Ford; J Kistler; M Zulauf
Journal:  J Struct Biol       Date:  1992 Nov-Dec       Impact factor: 2.867

10.  Structure of a KirBac potassium channel with an open bundle crossing indicates a mechanism of channel gating.

Authors:  Vassiliy N Bavro; Rita De Zorzi; Matthias R Schmidt; João R C Muniz; Lejla Zubcevic; Mark S P Sansom; Catherine Vénien-Bryan; Stephen J Tucker
Journal:  Nat Struct Mol Biol       Date:  2012-01-08       Impact factor: 18.361

View more
  6 in total

1.  Sparse and incomplete factorial matrices to screen membrane protein 2D crystallization.

Authors:  R Lasala; N Coudray; A Abdine; Z Zhang; M Lopez-Redondo; R Kirshenbaum; J Alexopoulos; Z Zolnai; D L Stokes; I Ubarretxena-Belandia
Journal:  J Struct Biol       Date:  2014-12-03       Impact factor: 2.867

2.  Perspective: A toolbox for protein structure determination in physiological environment through oriented, 2D ordered, site specific immobilization.

Authors:  M Altissimo; M Kiskinova; R Mincigrucci; L Vaccari; C Guarnaccia; C Masciovecchio
Journal:  Struct Dyn       Date:  2017-04-14       Impact factor: 2.920

3.  New Structural insights into Kir channel gating from molecular simulations, HDX-MS and functional studies.

Authors:  Charline Fagnen; Ludovic Bannwarth; Iman Oubella; Eric Forest; Rita De Zorzi; Aline de Araujo; Yasmina Mhoumadi; Saïd Bendahhou; David Perahia; Catherine Vénien-Bryan
Journal:  Sci Rep       Date:  2020-05-21       Impact factor: 4.379

4.  Integrative Study of the Structural and Dynamical Properties of a KirBac3.1 Mutant: Functional Implication of a Highly Conserved Tryptophan in the Transmembrane Domain.

Authors:  Charline Fagnen; Ludovic Bannwarth; Iman Oubella; Dania Zuniga; Ahmed Haouz; Eric Forest; Rosa Scala; Saïd Bendahhou; Rita De Zorzi; David Perahia; Catherine Vénien-Bryan
Journal:  Int J Mol Sci       Date:  2021-12-29       Impact factor: 5.923

5.  Unexpected Gating Behaviour of an Engineered Potassium Channel Kir.

Authors:  Charline Fagnen; Ludovic Bannwarth; Dania Zuniga; Iman Oubella; Rita De Zorzi; Eric Forest; Rosa Scala; Samuel Guilbault; Saïd Bendahhou; David Perahia; Catherine Vénien-Bryan
Journal:  Front Mol Biosci       Date:  2021-06-10

Review 6.  Two-Dimensional Crystallization Procedure, from Protein Expression to Sample Preparation.

Authors:  Qie Kuang; Pasi Purhonen; Hans Hebert
Journal:  Biomed Res Int       Date:  2015-08-27       Impact factor: 3.411

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.