| Literature DB >> 23868055 |
Yuan Shi1, Xiaxing Deng, Qian Zhan, Baiyong Shen, Xiaolong Jin, Zhecheng Zhu, Hao Chen, Hongwei Li, Chenghong Peng.
Abstract
BACKGROUND: Cholangiocarcinoma (CCA) is becoming a common fatal hepatic tumor. Early detection of CCA is hampered by the absence of a sufficiently accurate and noninvasive diagnostic test. Proteomic analysis would be a powerful tool to identify potential biomarkers of this cancer. AIMS: This study aims to identify new protein markers that are specific for CCA using proteomic approaches and to evaluate the performance of S100 calcium-binding protein A9 (S100A9) and chaperonin-containing TCR1, subunit 3 (CCTγ) as diagnostic markers for screening test of CCA.Entities:
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Year: 2013 PMID: 23868055 PMCID: PMC3753471 DOI: 10.1007/s11605-013-2182-9
Source DB: PubMed Journal: J Gastrointest Surg ISSN: 1091-255X Impact factor: 3.452
Fig. 1Representative 2D gel images indicating the differential spots
Differentially expressed proteins, as determined by Student’s t test between the normal control and tumor groups
| Pos. | Protein spots |
| Average ratio |
|---|---|---|---|
| 1 | 765 | 0.0054 | −4.47 |
| 2 | 1532 | 0.0060 | −4.46 |
| 3 | 755 | 0.0012 | −3.66 |
| 4 | 885 | 0.0056 | −3.55 |
| 5 | 1314 | 0.0023 | −3.33 |
| 6 | 1283 | 0.0095 | −3.27 |
| 7 | 1518 | 0.0020 | −3.21 |
| 8 | 1015 | 0.00069 | −2.65 |
| 9 | 1089 | 0.0042 | −2.62 |
| 10 | 1290 | 0.0091 | −2.47 |
| 11 | 644 | 0.0094 | −2.46 |
| 12 | 1327 | 0.0043 | −2.31 |
| 13 | 1116 | 0.0042 | −1.97 |
| 14 | 1338 | 0.0097 | −1.92 |
| 15 | 1322 | 0.0047 | −1.89 |
| 16 | 1083 | 0.0013 | −1.82 |
| 17 | 1082 | 0.0093 | −1.78 |
| 18 | 871 | 0.0081 | −1.69 |
| 19 | 898 | 0.0070 | −1.69 |
| 20 | 610 | 0.0014 | −1.60 |
| 21 | 439 | 0.0030 | 1.35 |
| 22 | 1255 | 0.0033 | 1.49 |
| 23 | 431 | 0.0020 | 1.83 |
| 24 | 334 | 0.0056 | 1.90 |
| 25 | 782 | 0.0085 | 2.16 |
Fig. 2Mascot score schematic diagram: x-axis as Mascot score (protein score), the y-axis is the number of matching. Score that exceeds the shaded area obtained positive identification (p < 0.05). a The matching and sequence coverage of protein no. 644 and protein ID gi|55960506 in database. b The matching and sequence coverage of protein no. 1518 and protein ID gi|4506773 in database
Differentially expressed proteins identified by MALDI-TOF after 2-D DIGE
| Spot no. | Protein ID | Name | Mr | PI | Sequence coverage (%) | Score | Peptide matches | Matched sequence |
|---|---|---|---|---|---|---|---|---|
| 334 | gi|28592 | Serum albumin ( | 71316 | 6.05 | 3 | 65 | 2 | K.YLYEIAR.R |
| K.KVPQVSTPTLVEVSR.N | ||||||||
| 610 | gi|3420181 | WDR1 protein ( | 58593 | 6.41 | 5 | 38 | 2 | K.VFASLPQVER.G |
| R.LATGSDDNCAAFFEGPPFK.F | ||||||||
| 644 | gi|55960506 | Chaperonin-containing TCP1, subunit 3 (γ) ( | 58505 | 6.46 | 22 | 71 | 9 | R.TQDEEVGDGTTTVVISAYRK.A |
| R.VEKIPGGIIEDSCVLR.G | ||||||||
| K.IPGGIIEDSCVLR.G | ||||||||
| K.GISDLAQHYLMR.A | ||||||||
| R.IVSRPEELREDDVGTGAGLLEIK.K | ||||||||
| K.AMTGVEQWPYR.A | ||||||||
| R.AVAQALEVIPR.T | ||||||||
| R.TLIQNCGASTIR.L | ||||||||
| K.TAVETAVLLLR.I | ||||||||
| 782 | gi|4501901 | Aminoacylase 1 ( | 46084 | 5.77 | 5 | 39 | 2 | K.GPEEEHPSVTLFR.Q |
| K.VVNSILAFR.E | ||||||||
| 871 | gi|5031777 | Isocitrate dehydrogenase 3 (NAD+) alpha precursor ( | 40022 | 6.47 | 8 | 108 | 3 | K.APIQWEER.N |
| K.TPYTDVNIVTIR.E | ||||||||
| R.IAEFAFEYAR.N | ||||||||
| 885 | gi|1575000 | 2,4-Dienoyl-CoA reductase | 36096 | 9.50 | 6 | 45 | 1 | K.VAGHPNIVINNAAGNFISPTER.L |
| 898 | gi|62896849 |
| 37697 | 5.81 | 31 | 120 | 11 | R.KAGVDPLVPLR.S |
| K.AGVDPLVPLR.S | ||||||||
| R.SLGLSLSGGDQEDAGR.I | ||||||||
| K.QAMFHYFQVPDR.L | ||||||||
| R.LGILTHLYR.D | ||||||||
| R.FAGFCRK.I | ||||||||
| R.KIAEGAQQGDPLSR.Y | ||||||||
| K.IAEGAQQGDPLSR.Y | ||||||||
| K.EGFLLALTQGR.E | ||||||||
| R.EIQAQNFFSSFTLMK.L | ||||||||
| R.HSSALGGASLGAR.H | ||||||||
| 1082 | gi|4757768 | Rho GDP dissociation inhibitor (GDI) alpha ( | 23250 | 5.02 | 17 | 119 | 3 | K.YIQHTYR.K |
| K.IDKTDYMVGSYGPR.A | ||||||||
| R.AEEYEFLTPVEEAPK.G | ||||||||
| 1089 | gi|539605 | GTP-binding protein G25K—human (fragments) | 6419 | 6.34 | 23 | 42 | 1 | R.IDKTDYMVGSYGPR.- |
| 1314 | gi|1421609 | Chain A, X-ray structure of Nm23 human nucleoside diphosphate kinase B complexed with GDP at 2 Å resolution | 17290 | 8.55 | 20 | 45 | 3 | R.TFIAIKPDGVQR.G |
| K.DRPFFPGLVK.Y | ||||||||
| R.GDFCIQVGR.N | ||||||||
| 1322 | gi|226449 | Cytochrome b5 | 15218 | 4.82 | 49 | 242 | 5 | K.YYTLEEIQK.H |
| K.STWLILHHK.V | ||||||||
| K.FLEEHPGGEEVLR.E | ||||||||
| R.EQAGGDATENFEDVGHSTDAR.E | ||||||||
| K.TFIIGELHPDDRPK.L | ||||||||
| 1327 | Mixture 1, gi|5453541 + gi|1421609 | Anterior gradient 2 homolog ( | 20024 | 9.03 | 26 | 68 | 5 | K.LPQTLSR.G |
| K.HLSPDGQYVPR.I | ||||||||
| R.IMFVDPSLTVR.A | ||||||||
| R.LYAYEPADTALLLDNMK.K | ||||||||
| R.LYAYEPADTALLLDNMKK.A | ||||||||
| 17270 | 8.55 | 38 | 67 | 5 | R.TFIAIKPDGVQR.G | |||
| K.FLRASEEHLK.Q | ||||||||
| K.DRPFFPGLVK.Y | ||||||||
| R.VMLGETNPADSKPGTIR.G | ||||||||
| R.GDFCIQVGR.N | ||||||||
| 1518 | gi|4506773 | S100 calcium-binding protein A9 ( | 13291 | 5.71 | 29 | 43 | 2 | K.LGHPDTLNQGEFK.E |
| K.MHEGDEGPGHHHKPGLGEGTP.- |
Fig. 3a Immunoperoxidase stains of a CCA case that is positive for S100A9, ×400 (the arrow points out a positive cell). b Immunoperoxidase stains of a non-CCA case that is negative for S100A9, ×400. c Immunoperoxidase stain of a case of hepatocellular carcinoma that is negative for S100A9, ×400. d Immunoperoxidase stain of case of cirrhosis that is negative for S100A9, ×400
Fig. 4a Immunoperoxidase stains of a CCA case that is positive for CCTγ, ×200 (the arrow points out a positive cell). b Immunoperoxidase stains of a non-CCA case that is negative for CCTγ, ×200. c Immunoperoxidase stain of a case of hepatocellular carcinoma that is negative for CCTγ, ×400. d Immunoperoxidase stain of case of cirrhosis that is negative for CCTγ, ×400
Fig. 5Receiver operating characteristic (ROC) curve analyses of S100A9 and CCTγ for the diagnosis of cholangiocarcinoma. The diagnostic accuracy of each biomarker, in terms of its sensitivity and specificity, were presented by ROC curve analysis. a and b correspond to S100A9 and CCTγ. Only the area under the curve (AUC) of the ROC is significantly higher than a chance value (0.5)