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Literature DB >> 23864230

Comparative mapping of Raphanus sativus genome using Brassica markers and quantitative trait loci analysis for the Fusarium wilt resistance trait.

Xiaona Yu¹, Su Ryun Choi, Nirala Ramchiary, Xinyang Miao, Su Hee Lee, Hae Jeong Sun, Sunggil Kim, Chun Hee Ahn, Yong Pyo Lim.

Abstract

Fusarium wilt (FW), caused by the soil-borne fungal pathogen Fusarium oxysporum is a serious disease in cruciferous plants, including the radish (Raphanus sativus). To identify quantitative trait loci (QTL) or gene(s) conferring resistance to FW, we constructed a genetic map of R. sativus using an F2 mapping population derived by crossing the inbred lines '835' (susceptible) and 'B2' (resistant). A total of 220 markers distributed in 9 linkage groups (LGs) were mapped in the Raphanus genome, covering a distance of 1,041.5 cM with an average distance between adjacent markers of 4.7 cM. Comparative analysis of the R. sativus genome with that of Arabidopsis thaliana and Brassica rapa revealed 21 and 22 conserved syntenic regions, respectively. QTL mapping detected a total of 8 loci conferring FW resistance that were distributed on 4 LGs, namely, 2, 3, 6, and 7 of the Raphanus genome. Of the detected QTL, 3 QTLs (2 on LG 3 and 1 on LG 7) were constitutively detected throughout the 2-year experiment. QTL analysis of LG 3, flanked by ACMP0609 and cnu_mBRPGM0085, showed a comparatively higher logarithm of the odds (LOD) value and percentage of phenotypic variation. Synteny analysis using the linked markers to this QTL showed homology to A. thaliana chromosome 3, which contains disease-resistance gene clusters, suggesting conservation of resistance genes between them.

Entities: Species

Mesh：

Substances：
Genetic Markers

Year: 2013 PMID： 23864230 DOI： 10.1007/s00122-013-2154-1

Source DB: PubMed Journal: Theor Appl Genet ISSN： 0040-5752 Impact factor: 5.699

27 in total

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9 in total

1. Isolation and characterization of fusarium wilt resistance gene analogs in radish.

Authors: Xiaona Yu; Dong Hyun Kang; Su Ryun Choi; Yinbo Ma; Lu Lu; Sang Heon Oh; Sushil Satish Chhapekar; Yong Pyo Lim
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Authors: Xiaona Yu; Su Ryun Choi; Sushil Satish Chhapekar; Lu Lu; Yinbo Ma; Ji-Young Lee; Seongmin Hong; Yoon-Young Kim; Sang Heon Oh; Yong Pyo Lim
Journal: Theor Appl Genet Date: 2019-09-27 Impact factor: 5.699

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Authors: Xiaona Yu; Lu Lu; Yinbo Ma; Sushil Satish Chhapekar; So Young Yi; Yong Pyo Lim; Su Ryun Choi
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Authors: Yinbo Ma; Sushil Satish Chhapekar; Lu Lu; Xiaona Yu; Seungho Kim; Soo Min Lee; Tae Hyoung Gan; Gyung Ja Choi; Yong Pyo Lim; Su Ryun Choi
Journal: Theor Appl Genet Date: 2021-08-13 Impact factor: 5.699