Literature DB >> 23856607

Developments in biobanking workflow standardization providing sample integrity and stability.

Johan Malm1, Thomas E Fehniger, Pia Danmyr, Akos Végvári, Charlotte Welinder, Henrik Lindberg, Roger Appelqvist, Karin Sjödin, Elisabet Wieslander, Thomas Laurell, Sophia Hober, Frode S Berven, David Fenyö, Xiangdong Wang, Per E Andrén, Goutham Edula, Elisabet Carlsohn, Manuel Fuentes, Carol L Nilsson, Magnus Dahlbäck, Melinda Rezeli, David Erlinge, György Marko-Varga.   

Abstract

Recommendations and outlines for standardization in biobanking processes are presented by a research team with long-term experience in clinical studies. These processes have important bearing on the use of samples in developing assays. These measurements are useful to document states of health and disease that are beneficial for academic research, commercial healthcare, drug development industry and government regulating agencies. There is a need for increasing awareness within proteomic and genomic communities regarding the basic concepts of collecting, storing and utilizing clinical samples. Quality control and sample suitability for analysis need to be documented and validated to ensure data integrity and establish contexts for interpretation of results. Standardized methods in proteomics and genomics are required to be practiced throughout the community allowing datasets to be comparable and shared for analysis. For example, sample processing of thousands of clinical samples, performed in 384 high-density sample tube systems in a fully automated workflow, preserves sample content and is presented showing validation criteria. Large studies will be accompanied by biological and molecular information with corresponding clinical records from patients and healthy donors. These developments position biobanks of human patient samples as an increasingly recognized major asset in disease research, future drug development and within patient care. BIOLOGICAL SIGNIFICANCE: The current manuscript is of major relevance to the proteomic and genomic fields, as it outlines the standardization aspects of biobanking and the requirements that are needed to run future clinical studies that will benefit the patients where OMICS science will play a major role. A global view of the field is given where best practice and conventional acceptances are presented along with ongoing large-scale biobanking projects. The authors represent broadly stakeholders that cover the academic, pharma, biotech and healthcare fields with extensive experience and deliveries. This contribution will be a milestone paper to the proteomic and genomic scientists to present data in the future that will have impact to the life science area. This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics.
© 2013.

Entities:  

Keywords:  Antibodies; Biobank; Diseases; Mass spectrometry; Proteins; Standardization

Mesh:

Year:  2013        PMID: 23856607     DOI: 10.1016/j.jprot.2013.06.035

Source DB:  PubMed          Journal:  J Proteomics        ISSN: 1874-3919            Impact factor:   4.044


  15 in total

1.  Microsampling with cotton thread: Storage and ultra-sensitive analysis by thread spray mass Spectrometry.

Authors:  Devin J Swiner; Sierra Jackson; George R Durisek; Bridget K Walsh; Yaman Kouatli; Abraham K Badu-Tawiah
Journal:  Anal Chim Acta       Date:  2019-07-09       Impact factor: 6.558

2.  Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.

Authors:  Vera Ignjatovic; Philipp E Geyer; Krishnan K Palaniappan; Jessica E Chaaban; Gilbert S Omenn; Mark S Baker; Eric W Deutsch; Jochen M Schwenk
Journal:  J Proteome Res       Date:  2019-10-11       Impact factor: 4.466

3.  Digital pathology and image analysis augment biospecimen annotation and biobank quality assurance harmonization.

Authors:  Bih-Rong Wei; R Mark Simpson
Journal:  Clin Biochem       Date:  2013-12-18       Impact factor: 3.281

4.  Semi-automated biobank sample processing with a 384 high density sample tube robot used in cancer and cardiovascular studies.

Authors:  Johan Malm; Henrik Lindberg; David Erlinge; Roger Appelqvist; Maria Yakovleva; Charlotte Welinder; Erik Steinfelder; Thomas E Fehniger; György Marko-Varga
Journal:  Clin Transl Med       Date:  2015-08-14

Review 5.  A proteomic approach to obesity and type 2 diabetes.

Authors:  Elena López-Villar; Gabriel Á Martos-Moreno; Julie A Chowen; Shigeru Okada; John J Kopchick; Jesús Argente
Journal:  J Cell Mol Med       Date:  2015-05-09       Impact factor: 5.310

6.  Clinical proteomic biomarkers: relevant issues on study design & technical considerations in biomarker development.

Authors:  Maria Frantzi; Akshay Bhat; Agnieszka Latosinska
Journal:  Clin Transl Med       Date:  2014-03-29

7.  Needs and Requirements of Modern Biobanks on the Example of Dystonia Syndromes.

Authors:  Ebba Lohmann; Thomas Gasser; Kathrin Grundmann
Journal:  Front Neurol       Date:  2017-01-30       Impact factor: 4.003

8.  The impact of pre-freezing storage time and temperature on gene expression of blood collected in EDTA tubes.

Authors:  Serena Martire; Paola Valentino; Fabiana Marnetto; Luca Mirabile; Marco Capobianco; Antonio Bertolotto
Journal:  Mol Biol Rep       Date:  2022-03-12       Impact factor: 2.742

Review 9.  Proteomics-based discovery of biomarkers for paediatric acute lymphoblastic leukaemia: challenges and opportunities.

Authors:  Elena López Villar; Duojiao Wu; William C Cho; Luis Madero; Xiangdong Wang
Journal:  J Cell Mol Med       Date:  2014-06-09       Impact factor: 5.310

10.  Biomarkers of early chronic obstructive pulmonary disease (COPD) in smokers and former smokers. Protocol of a longitudinal study.

Authors:  Mikael Truedsson; Johan Malm; K Barbara Sahlin; May Bugge; Elisabet Wieslander; Magnus Dahlbäck; Roger Appelqvist; Thomas E Fehniger; György Marko-Varga
Journal:  Clin Transl Med       Date:  2016-03-07
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