Literature DB >> 23852434

A multiplexed luciferase-based screening platform for interrogating cancer-associated signal transduction in cultured cells.

Ozlem Kulak1, Lawrence Lum.   

Abstract

Genome-scale interrogation of gene function using RNA interference (RNAi) holds tremendous promise for the rapid identification of chemically tractable cancer cell vulnerabilities. Limiting the potential of this technology is the inability to rapidly delineate the mechanistic basis of phenotypic outcomes and thus inform the development of molecularly targeted therapeutic strategies. We outline here methods to deconstruct cellular phenotypes induced by RNAi-mediated gene targeting using multiplexed reporter systems that allow monitoring of key cancer cell-associated processes. This high-content screening methodology is versatile and can be readily adapted for the screening of other types of large molecular libraries.

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Year:  2013        PMID: 23852434      PMCID: PMC3731200          DOI: 10.3791/50369

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  17 in total

1.  High-throughput RNAi screening to dissect cellular pathways: a how-to guide.

Authors:  Christina Falschlehner; Sandra Steinbrink; Gerrit Erdmann; Michael Boutros
Journal:  Biotechnol J       Date:  2010-04       Impact factor: 4.677

2.  A transcriptionally active DNA-binding site for human p53 protein complexes.

Authors:  W D Funk; D T Pak; R H Karas; W E Wright; J W Shay
Journal:  Mol Cell Biol       Date:  1992-06       Impact factor: 4.272

Review 3.  Seeing the light: luminescent reporter gene assays.

Authors:  Loren J Miraglia; Frederick J King; Robert Damoiseaux
Journal:  Comb Chem High Throughput Screen       Date:  2011-09       Impact factor: 1.339

4.  Development of Neh2-luciferase reporter and its application for high throughput screening and real-time monitoring of Nrf2 activators.

Authors:  Natalya A Smirnova; Renee E Haskew-Layton; Manuela Basso; Dmitry M Hushpulian; Jimmy B Payappilly; Rachel E Speer; Young-Hoon Ahn; Ilay Rakhman; Philip A Cole; John T Pinto; Rajiv R Ratan; Irina G Gazaryan
Journal:  Chem Biol       Date:  2011-06-24

Review 5.  Chemiluminescent and bioluminescent reporter gene assays.

Authors:  I Bronstein; J Fortin; P E Stanley; G S Stewart; L J Kricka
Journal:  Anal Biochem       Date:  1994-06       Impact factor: 3.365

6.  A genome-wide RNAi screen for Wnt/beta-catenin pathway components identifies unexpected roles for TCF transcription factors in cancer.

Authors:  Wei Tang; Michael Dodge; Deepika Gundapaneni; Carolyn Michnoff; Michael Roth; Lawrence Lum
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-10       Impact factor: 11.205

7.  Comprehensive molecular characterization of human colon and rectal cancer.

Authors: 
Journal:  Nature       Date:  2012-07-18       Impact factor: 49.962

8.  A novel multiplex cell viability assay for high-throughput RNAi screening.

Authors:  Daniel F Gilbert; Gerrit Erdmann; Xian Zhang; Anja Fritzsche; Kubilay Demir; Andreas Jaedicke; Katja Muehlenberg; Erich E Wanker; Michael Boutros
Journal:  PLoS One       Date:  2011-12-05       Impact factor: 3.240

9.  Comprehensive molecular portraits of human breast tumours.

Authors: 
Journal:  Nature       Date:  2012-09-23       Impact factor: 49.962

10.  Small molecule-mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer.

Authors:  Baozhi Chen; Michael E Dodge; Wei Tang; Jianming Lu; Zhiqiang Ma; Chih-Wei Fan; Shuguang Wei; Wayne Hao; Jessica Kilgore; Noelle S Williams; Michael G Roth; James F Amatruda; Chuo Chen; Lawrence Lum
Journal:  Nat Chem Biol       Date:  2009-01-04       Impact factor: 15.040

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  4 in total

1.  Stereoselective fatty acylation is essential for the release of lipidated WNT proteins from the acyltransferase Porcupine (PORCN).

Authors:  Rubina Tuladhar; Nageswari Yarravarapu; Yuyong Ma; Chengwei Zhang; Jeremiah Herbert; James Kim; Chuo Chen; Lawrence Lum
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

2.  Identification of therapeutic small-molecule leads in cultured cells using multiplexed pathway reporter readouts.

Authors:  Ozlem Kulak; Kiyoshi Yamaguchi; Lawrence Lum
Journal:  Methods Mol Biol       Date:  2015

3.  Rapid identification of mRNA processing defects with a novel single-cell yeast reporter.

Authors:  Matthew R Sorenson; Scott W Stevens
Journal:  RNA       Date:  2014-03-26       Impact factor: 4.942

Review 4.  Zebrafish small molecule screens: Taking the phenotypic plunge.

Authors:  Charles H Williams; Charles C Hong
Journal:  Comput Struct Biotechnol J       Date:  2016-09-18       Impact factor: 7.271

  4 in total

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