Literature DB >> 23847812

Systems approach to developmental biology--designs for robust patterning.

Yoshihiro Morishita1, Ken-Ichi Hironaka.   

Abstract

Patterning is an important step in animal development that generates spatially non-uniform gene expression patterns or spatially heterogeneous cellular responses. Patterning is realised by the generation and reading of positional information provided by spatial gradients of morphogens, diffusive chemicals in the extracellular environment. To achieve normal development, accurate patterning that is robust against noise is necessary. Here the authors describe how morphogen gradient formation and gradient interpretation processes are designed to achieve highly reproducible patterning. Furthermore, recent advancements in measurement and imaging techniques have enabled researchers to obtain quantitative dynamic and multi-physical data, not only for chemical events, but also for the geometrical and mechanical properties of cells in vivo. The authors briefly review some recent studies on the effects of such non-chemical events on patterning.

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Year:  2013        PMID: 23847812      PMCID: PMC8687163          DOI: 10.1049/iet-syb.2012.0042

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  62 in total

1.  Cytonemes: cellular processes that project to the principal signaling center in Drosophila imaginal discs.

Authors:  F A Ramírez-Weber; T B Kornberg
Journal:  Cell       Date:  1999-05-28       Impact factor: 41.582

Review 2.  Opposing FGF and retinoid pathways: a signalling switch that controls differentiation and patterning onset in the extending vertebrate body axis.

Authors:  Ruth Diez del Corral; Kate G Storey
Journal:  Bioessays       Date:  2004-08       Impact factor: 4.345

3.  Predicting embryonic patterning using mutual entropy fitness and in silico evolution.

Authors:  Paul François; Eric D Siggia
Journal:  Development       Date:  2010-07       Impact factor: 6.868

4.  Hexagonal packing of Drosophila wing epithelial cells by the planar cell polarity pathway.

Authors:  Anne-Kathrin Classen; Kurt I Anderson; Eric Marois; Suzanne Eaton
Journal:  Dev Cell       Date:  2005-12       Impact factor: 12.270

5.  Optimal placement of multiple morphogen sources.

Authors:  Y Morishita; Y Iwasa
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-04-16

6.  Combinatorial binding predicts spatio-temporal cis-regulatory activity.

Authors:  Robert P Zinzen; Charles Girardot; Julien Gagneur; Martina Braun; Eileen E M Furlong
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

7.  Mechanisms for split localization of Fgf10 expression in early lung development.

Authors:  Tsuyoshi Hirashima; Yoh Iwasa; Yoshihiro Morishita
Journal:  Dev Dyn       Date:  2009-11       Impact factor: 3.780

8.  Random cell movement promotes synchronization of the segmentation clock.

Authors:  Koichiro Uriu; Yoshihiro Morishita; Yoh Iwasa
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

9.  Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.

Authors:  David M Umulis; Osamu Shimmi; Michael B O'Connor; Hans G Othmer
Journal:  Dev Cell       Date:  2010-02-16       Impact factor: 12.270

10.  fgf8 mRNA decay establishes a gradient that couples axial elongation to patterning in the vertebrate embryo.

Authors:  Julien Dubrulle; Olivier Pourquié
Journal:  Nature       Date:  2004-01-29       Impact factor: 49.962

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  2 in total

Review 1.  Top-down models in biology: explanation and control of complex living systems above the molecular level.

Authors:  Giovanni Pezzulo; Michael Levin
Journal:  J R Soc Interface       Date:  2016-11       Impact factor: 4.118

Review 2.  Re-membering the body: applications of computational neuroscience to the top-down control of regeneration of limbs and other complex organs.

Authors:  G Pezzulo; M Levin
Journal:  Integr Biol (Camb)       Date:  2015-11-16       Impact factor: 2.192

  2 in total

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