Literature DB >> 23847748

Progress toward an aberration-corrected low energy electron microscope for DNA sequencing and surface analysis.

Marian Mankos1, Khashayar Shadman, Alpha T N'diaye, Andreas K Schmid, Henrik H J Persson, Ronald W Davis.   

Abstract

Monochromatic, aberration-corrected, dual-beam low energy electron microscopy (MAD-LEEM) is a novel imaging technique aimed at high resolution imaging of macromolecules, nanoparticles, and surfaces. MAD-LEEM combines three innovative electron-optical concepts in a single tool: a monochromator, a mirror aberration corrector, and dual electron beam illumination. The monochromator reduces the energy spread of the illuminating electron beam, which significantly improves spectroscopic and spatial resolution. The aberration corrector is needed to achieve subnanometer resolution at landing energies of a few hundred electronvolts. The dual flood illumination approach eliminates charging effects generated when a conventional, single-beam LEEM is used to image insulating specimens. The low landing energy of electrons in the range of 0 to a few hundred electronvolts is also critical for avoiding radiation damage, as high energy electrons with kilo-electron-volt kinetic energies cause irreversible damage to many specimens, in particular biological molecules. The performance of the key electron-optical components of MAD-LEEM, the aberration corrector combined with the objective lens and a magnetic beam separator, was simulated. Initial results indicate that an electrostatic electron mirror has negative spherical and chromatic aberration coefficients that can be tuned over a large parameter range. The negative aberrations generated by the electron mirror can be used to compensate the aberrations of the LEEM objective lens for a range of electron energies and provide a path to achieving subnanometer spatial resolution. First experimental results on characterizing DNA molecules immobilized on Au substrates in a LEEM are presented. Images obtained in a spin-polarized LEEM demonstrate that high contrast is achievable at low electron energies in the range of 1-10 eV and show that small changes in landing energy have a strong impact on the achievable contrast. The MAD-LEEM approach promises to significantly improve the performance of a LEEM for a wide range of applications in the biosciences, material sciences, and nanotechnology where nanometer scale resolution and analytical capabilities are required. In particular, the microscope has the potential of delivering images of unlabeled DNA strands with nucleotide-specific contrast. This simplifies specimen preparation and significantly eases the computational complexity needed to assemble the DNA sequence from individual reads.

Entities:  

Year:  2012        PMID: 23847748      PMCID: PMC3634312          DOI: 10.1116/1.4764095

Source DB:  PubMed          Journal:  J Vac Sci Technol B Nanotechnol Microelectron        ISSN: 2166-2746


  9 in total

1.  Construction and characterization of the fringe field monochromator for a field emission gun

Authors: 
Journal:  Ultramicroscopy       Date:  2000-04       Impact factor: 2.689

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Double aberration correction in a low-energy electron microscope.

Authors:  Th Schmidt; H Marchetto; P L Lévesque; U Groh; F Maier; D Preikszas; P Hartel; R Spehr; G Lilienkamp; W Engel; R Fink; E Bauer; H Rose; E Umbach; H-J Freund
Journal:  Ultramicroscopy       Date:  2010-07-13       Impact factor: 2.689

4.  A new aberration-corrected, energy-filtered LEEM/PEEM instrument. I. Principles and design.

Authors:  R M Tromp; J B Hannon; A W Ellis; W Wan; A Berghaus; O Schaff
Journal:  Ultramicroscopy       Date:  2010-03-31       Impact factor: 2.689

5.  Nondestructive imaging of individual biomolecules.

Authors:  Matthias Germann; Tatiana Latychevskaia; Conrad Escher; Hans-Werner Fink
Journal:  Phys Rev Lett       Date:  2010-03-02       Impact factor: 9.161

6.  Conductivity of a single DNA duplex bridging a carbon nanotube gap.

Authors:  Xuefeng Guo; Alon A Gorodetsky; James Hone; Jacqueline K Barton; Colin Nuckolls
Journal:  Nat Nanotechnol       Date:  2008-02-10       Impact factor: 39.213

7.  High-energy-resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy.

Authors:  Ondrej L Krivanek; Jonathan P Ursin; Neil J Bacon; George J Corbin; Niklas Dellby; Petr Hrncirik; Matthew F Murfitt; Christopher S Own; Zoltan S Szilagyi
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-09-28       Impact factor: 4.226

8.  Alignment and sensitive detection of DNA by a moving interface.

Authors:  A Bensimon; A Simon; A Chiffaudel; V Croquette; F Heslot; D Bensimon
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

9.  Trends in low energy electron microscopy.

Authors:  M S Altman
Journal:  J Phys Condens Matter       Date:  2010-03-05       Impact factor: 2.333

  9 in total
  3 in total

1.  A novel low energy electron microscope for DNA sequencing and surface analysis.

Authors:  M Mankos; K Shadman; H H J Persson; A T N'Diaye; A K Schmid; R W Davis
Journal:  Ultramicroscopy       Date:  2014-01-31       Impact factor: 2.689

2.  A monochromatic, aberration-corrected, dual-beam low energy electron microscope.

Authors:  Marian Mankos; Khashayar Shadman
Journal:  Ultramicroscopy       Date:  2013-03-21       Impact factor: 2.689

3.  Nucleotide-Specific Contrast for DNA Sequencing by Electron Spectroscopy.

Authors:  Marian Mankos; Henrik H J Persson; Alpha T N'Diaye; Khashayar Shadman; Andreas K Schmid; Ronald W Davis
Journal:  PLoS One       Date:  2016-05-05       Impact factor: 3.240

  3 in total

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