Literature DB >> 23832195

Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii.

Tsutomu Nakamura1, Aika Mori, Mayumi Niiyama, Hiroyoshi Matsumura, Chisa Tokuyama, Junji Morita, Koichi Uegaki, Tsuyoshi Inoue.   

Abstract

The crystal structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii (PhPrx) was determined at a resolution of 2.25 Å. The overall structure was a ring-type decamer consisting of five homodimers. Citrate, which was included in the crystallization conditions, was bound to the peroxidatic cysteine of the active site, with two O atoms of the carboxyl group mimicking those of the substrate hydrogen peroxide. PhPrx lacked the C-terminal tail that forms a 32-residue extension of the protein in the homologous peroxiredoxin from Aeropyrum pernix (ApPrx).

Entities:  

Keywords:  Pyrococcus horikoshii; peroxiredoxins

Mesh:

Substances:

Year:  2013        PMID: 23832195      PMCID: PMC3702312          DOI: 10.1107/S1744309113014036

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

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Authors:  Tsutomu Nakamura; Takahiko Yamamoto; Tsuyoshi Inoue; Hiroyoshi Matsumura; Atsuko Kobayashi; Yoshihisa Hagihara; Koichi Uegaki; Mitsuo Ataka; Yasushi Kai; Kazuhiko Ishikawa
Journal:  Proteins       Date:  2006-03-15

2.  Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

Authors:  Tsutomu Nakamura; Hiroyoshi Matsumura; Tsuyoshi Inoue; Yasushi Kai; Koichi Uegaki; Yoshihisa Hagihara; Mitsuo Ataka; Kazuhiko Ishikawa
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-02-24

3.  Crystal structure of a novel human peroxidase enzyme at 2.0 A resolution.

Authors:  H J Choi; S W Kang; C H Yang; S G Rhee; S E Ryu
Journal:  Nat Struct Biol       Date:  1998-05

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Using CLUSTAL for multiple sequence alignments.

Authors:  D G Higgins; J D Thompson; T J Gibson
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

6.  Crystal structure of an archaeal peroxiredoxin from the aerobic hyperthermophilic crenarchaeon Aeropyrum pernix K1.

Authors:  Eiichi Mizohata; Hiroaki Sakai; Emiko Fusatomi; Takaho Terada; Kazutaka Murayama; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  J Mol Biol       Date:  2005-09-22       Impact factor: 5.469

7.  Crystal structure of human peroxiredoxin 5, a novel type of mammalian peroxiredoxin at 1.5 A resolution.

Authors:  J P Declercq; C Evrard; A Clippe; D V Stricht; A Bernard; B Knoops
Journal:  J Mol Biol       Date:  2001-08-24       Impact factor: 5.469

8.  Oxidative stress response in an anaerobic hyperthermophilic archaeon: presence of a functional peroxiredoxin in Pyrococcus horikoshii.

Authors:  Ryushi Kawakami; Haruhiko Sakuraba; Shintaro Kamohara; Shuichiro Goda; Yutaka Kawarabayasi; Toshihisa Ohshima
Journal:  J Biochem       Date:  2004-10       Impact factor: 3.387

9.  Mapping the active site helix-to-strand conversion of CxxxxC peroxiredoxin Q enzymes.

Authors:  Arden Perkins; Michael C Gretes; Kimberly J Nelson; Leslie B Poole; P Andrew Karplus
Journal:  Biochemistry       Date:  2012-09-14       Impact factor: 3.162

10.  Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate.

Authors:  Tsutomu Nakamura; Takahiko Yamamoto; Manabu Abe; Hiroyoshi Matsumura; Yoshihisa Hagihara; Tadashi Goto; Takafumi Yamaguchi; Tsuyoshi Inoue
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

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  3 in total

1.  Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.

Authors:  Tomoki Himiyama; Tsutomu Nakamura
Journal:  Protein Sci       Date:  2020-02-12       Impact factor: 6.725

Review 2.  Redox and Thiols in Archaea.

Authors:  Mamta Rawat; Julie A Maupin-Furlow
Journal:  Antioxidants (Basel)       Date:  2020-05-05

3.  Active-site plasticity revealed in the asymmetric dimer of AnPrx6 the 1-Cys peroxiredoxin and molecular chaperone from Anabaena sp. PCC 7210.

Authors:  Yogesh Mishra; Michael Hall; Roland Locmelis; Kwangho Nam; Christopher A G Söderberg; Patrik Storm; Neha Chaurasia; Lal Chand Rai; Stefan Jansson; Wolfgang P Schröder; Uwe H Sauer
Journal:  Sci Rep       Date:  2017-12-07       Impact factor: 4.379

  3 in total

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