Literature DB >> 23818641

Systematic profiling of Caenorhabditis elegans locomotive behaviors reveals additional components in G-protein Gαq signaling.

Hui Yu1, Boanerges Aleman-Meza, Shahla Gharib, Marta K Labocha, Christopher J Cronin, Paul W Sternberg, Weiwei Zhong.   

Abstract

Genetic screens have been widely applied to uncover genetic mechanisms of movement disorders. However, most screens rely on human observations of qualitative differences. Here we demonstrate the application of an automatic imaging system to conduct a quantitative screen for genes regulating the locomotive behavior in Caenorhabditis elegans. Two hundred twenty-seven neuronal signaling genes with viable homozygous mutants were selected for this study. We tracked and recorded each animal for 4 min and analyzed over 4,400 animals of 239 genotypes to obtain a quantitative, 10-parameter behavioral profile for each genotype. We discovered 87 genes whose inactivation causes movement defects, including 50 genes that had never been associated with locomotive defects. Computational analysis of the high-content behavioral profiles predicted 370 genetic interactions among these genes. Network partition revealed several functional modules regulating locomotive behaviors, including sensory genes that detect environmental conditions, genes that function in multiple types of excitable cells, and genes in the signaling pathway of the G protein Gαq, a protein that is essential for animal life and behavior. We developed quantitative epistasis analysis methods to analyze the locomotive profiles and validated the prediction of the γ isoform of phospholipase C as a component in the Gαq pathway. These results provided a system-level understanding of how neuronal signaling genes coordinate locomotive behaviors. This study also demonstrated the power of quantitative approaches in genetic studies.

Entities:  

Keywords:  gene network; high-content screening; locomotion

Mesh:

Substances:

Year:  2013        PMID: 23818641      PMCID: PMC3718121          DOI: 10.1073/pnas.1310468110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Epistasis analysis with global transcriptional phenotypes.

Authors:  Nancy Van Driessche; Janez Demsar; Ezgi O Booth; Paul Hill; Peter Juvan; Blaz Zupan; Adam Kuspa; Gad Shaulsky
Journal:  Nat Genet       Date:  2005-04-10       Impact factor: 38.330

2.  Modular epistasis in yeast metabolism.

Authors:  Daniel Segrè; Alexander Deluna; George M Church; Roy Kishony
Journal:  Nat Genet       Date:  2004-12-12       Impact factor: 38.330

3.  Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Authors:  B Sönnichsen; L B Koski; A Walsh; P Marschall; B Neumann; M Brehm; A-M Alleaume; J Artelt; P Bettencourt; E Cassin; M Hewitson; C Holz; M Khan; S Lazik; C Martin; B Nitzsche; M Ruer; J Stamford; M Winzi; R Heinkel; M Röder; J Finell; H Häntsch; S J M Jones; M Jones; F Piano; K C Gunsalus; K Oegema; P Gönczy; A Coulson; A A Hyman; C J Echeverri
Journal:  Nature       Date:  2005-03-24       Impact factor: 49.962

4.  Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.

Authors:  Kristin C Gunsalus; Hui Ge; Aaron J Schetter; Debra S Goldberg; Jing-Dong J Han; Tong Hao; Gabriel F Berriz; Nicolas Bertin; Jerry Huang; Ling-Shiang Chuang; Ning Li; Ramamurthy Mani; Anthony A Hyman; Birte Sönnichsen; Christophe J Echeverri; Frederick P Roth; Marc Vidal; Fabio Piano
Journal:  Nature       Date:  2005-08-11       Impact factor: 49.962

5.  Antagonism between G(o)alpha and G(q)alpha in Caenorhabditis elegans: the RGS protein EAT-16 is necessary for G(o)alpha signaling and regulates G(q)alpha activity.

Authors:  Y M Hajdu-Cronin; W J Chen; G Patikoglou; M R Koelle; P W Sternberg
Journal:  Genes Dev       Date:  1999-07-15       Impact factor: 11.361

6.  Convergent, RIC-8-dependent Galpha signaling pathways in the Caenorhabditis elegans synaptic signaling network.

Authors:  Nicole K Reynolds; Michael A Schade; Kenneth G Miller
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

7.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

8.  Mutations that rescue the paralysis of Caenorhabditis elegans ric-8 (synembryn) mutants activate the G alpha(s) pathway and define a third major branch of the synaptic signaling network.

Authors:  Michael A Schade; Nicole K Reynolds; Claudia M Dollins; Kenneth G Miller
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

9.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

10.  An automated system for measuring parameters of nematode sinusoidal movement.

Authors:  Christopher J Cronin; Jane E Mendel; Saleem Mukhtar; Young-Mee Kim; Robert C Stirbl; Jehoshua Bruck; Paul W Sternberg
Journal:  BMC Genet       Date:  2005-02-07       Impact factor: 2.797

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  17 in total

1.  Locomotion Behavior Is Affected by the GαS Pathway and the Two-Pore-Domain K+ Channel TWK-7 Interacting in GABAergic Motor Neurons in Caenorhabditis elegans.

Authors:  Dieter-Christian Gottschling; Frank Döring; Kai Lüersen
Journal:  Genetics       Date:  2017-03-24       Impact factor: 4.562

2.  Serotonin signals through postsynaptic Gαq, Trio RhoGEF, and diacylglycerol to promote Caenorhabditis elegans egg-laying circuit activity and behavior.

Authors:  Pravat Dhakal; Sana I Chaudhry; Rossana Signorelli; Kevin M Collins
Journal:  Genetics       Date:  2022-07-04       Impact factor: 4.402

Review 3.  Lipid and Carbohydrate Metabolism in Caenorhabditis elegans.

Authors:  Jennifer L Watts; Michael Ristow
Journal:  Genetics       Date:  2017-10       Impact factor: 4.562

4.  Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.

Authors:  Troy A McDiarmid; Manuel Belmadani; Joseph Liang; Fabian Meili; Eleanor A Mathews; Gregory P Mullen; Ardalan Hendi; Wan-Rong Wong; James B Rand; Kota Mizumoto; Kurt Haas; Paul Pavlidis; Catharine H Rankin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-21       Impact factor: 11.205

5.  A Generative Statistical Algorithm for Automatic Detection of Complex Postures.

Authors:  Stanislav Nagy; Marc Goessling; Yali Amit; David Biron
Journal:  PLoS Comput Biol       Date:  2015-10-06       Impact factor: 4.475

6.  Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans.

Authors:  Rajarshi Ghosh; Joshua S Bloom; Aylia Mohammadi; Molly E Schumer; Peter Andolfatto; William Ryu; Leonid Kruglyak
Journal:  Genetics       Date:  2015-06-19       Impact factor: 4.562

7.  WormGender - Open-Source Software for Automatic Caenorhabditis elegans Sex Ratio Measurement.

Authors:  Marta K Labocha; Sang-Kyu Jung; Boanerges Aleman-Meza; Zheng Liu; Weiwei Zhong
Journal:  PLoS One       Date:  2015-09-30       Impact factor: 3.240

8.  QuantWorm: a comprehensive software package for Caenorhabditis elegans phenotypic assays.

Authors:  Sang-Kyu Jung; Boanerges Aleman-Meza; Celeste Riepe; Weiwei Zhong
Journal:  PLoS One       Date:  2014-01-08       Impact factor: 3.240

9.  Model-independent phenotyping of C. elegans locomotion using scale-invariant feature transform.

Authors:  Yelena Koren; Raphael Sznitman; Paulo E Arratia; Christopher Carls; Predrag Krajacic; André E X Brown; Josué Sznitman
Journal:  PLoS One       Date:  2015-03-27       Impact factor: 3.240

10.  An automated system for quantitative analysis of Drosophila larval locomotion.

Authors:  Boanerges Aleman-Meza; Sang-Kyu Jung; Weiwei Zhong
Journal:  BMC Dev Biol       Date:  2015-02-24       Impact factor: 1.978

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