Literature DB >> 23816509

Development and evaluation of a 28S rRNA gene-based nested PCR assay for P. falciparum and P. vivax.

Deepak Pakalapati1, Shilpi Garg, Sheetal Middha, Jyoti Acharya, Amit K Subudhi, Arunachalam P Boopathi, Vishal Saxena, Sanjay K Kochar, Dhanpat K Kochar, Ashis Das.   

Abstract

The 28S rRNA gene was amplified and sequenced from P. falciparum and P. vivax isolates collected from northwest India. Based upon the sequence diversity of the Plasmodium 28SrRNA gene in comparison with its human counterpart, various nested polymerase chain reaction (PCR) primers were designed from the 3R region of the 28SrRNA gene and evaluated on field isolates. This is the first report demonstrating the utility of this gene for species-specific diagnosis of malaria for these two species, prevalent in India. The initial evaluation on 363 clinical isolates indicated that, in comparison with microscopy, which showed sensitivity and specificity of 85·39% and 100% respectively, the sensitivity and specificity of the nested PCR assay was found to be 99·08% and 100% respectively. This assay was also successful in detecting mixed infections that are undetected by microscopy. Our results demonstrate the utility of the 28S rRNA gene as a diagnostic target for the detection of the major plasmodial species infecting humans.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23816509      PMCID: PMC4001468          DOI: 10.1179/2047773213Y.0000000090

Source DB:  PubMed          Journal:  Pathog Glob Health        ISSN: 2047-7724            Impact factor:   2.894


  43 in total

Review 1.  Severe falciparum malaria. World Health Organization, Communicable Diseases Cluster.

Authors: 
Journal:  Trans R Soc Trop Med Hyg       Date:  2000-04       Impact factor: 2.184

2.  Intercontinental spread of pyrimethamine-resistant malaria.

Authors:  Cally Roper; Richard Pearce; Shalini Nair; Brian Sharp; François Nosten; Tim Anderson
Journal:  Science       Date:  2004-08-20       Impact factor: 47.728

Review 3.  Mixed-species malaria infections in humans.

Authors:  Mayfong Mayxay; Sasithon Pukrittayakamee; Paul N Newton; Nicholas J White
Journal:  Trends Parasitol       Date:  2004-05

4.  Real-time fluorescence-based PCR for detection of malaria parasites.

Authors:  May-Ann Lee; Chiew-Hoon Tan; Lay-Tin Aw; Choon-Siang Tang; Mulkit Singh; Sze-Hee Lee; Hwee-Pin Chia; Eric P H Yap
Journal:  J Clin Microbiol       Date:  2002-11       Impact factor: 5.948

5.  Evaluation of the ICT malaria P.f/P.v and the OptiMal rapid diagnostic tests for malaria in febrile returned travellers.

Authors:  E Geoffrey Playford; John Walker
Journal:  J Clin Microbiol       Date:  2002-11       Impact factor: 5.948

6.  Functional equivalence of structurally distinct ribosomes in the malaria parasite, Plasmodium berghei.

Authors:  R M van Spaendonk; J Ramesar; A van Wigcheren; W Eling; A L Beetsma; G J van Gemert; J Hooghof; C J Janse; A P Waters
Journal:  J Biol Chem       Date:  2001-04-05       Impact factor: 5.157

7.  Cerebral malaria and mixed falciparum-vivax infections.

Authors:  P C Lyn
Journal:  Ann Acad Med Singap       Date:  1987-04       Impact factor: 2.473

8.  Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA.

Authors:  Allison Demas; Jenna Oberstaller; Jeremy DeBarry; Naomi W Lucchi; Ganesh Srinivasamoorthy; Deborah Sumari; Abdunoor M Kabanywanyi; Leopoldo Villegas; Ananias A Escalante; S Patrick Kachur; John W Barnwell; David S Peterson; Venkatachalam Udhayakumar; Jessica C Kissinger
Journal:  J Clin Microbiol       Date:  2011-04-27       Impact factor: 5.948

9.  A multiplex polymerase chain reaction for a differential diagnosis of Plasmodium falciparum and Plasmodium vivax.

Authors:  Weon-Gyu Kho; Joon-Yong Chung; Eun-Jeong Sim; Myeong-You Kim; Dong-Wook Kim; Somchai Jongwutiwes; Kazuyuki Tanabe
Journal:  Parasitol Int       Date:  2003-09       Impact factor: 2.230

10.  Evaluation of the Binax NOW ICT test versus polymerase chain reaction and microscopy for the detection of malaria in returned travelers.

Authors:  Gabriella A Farcas; Kathleen J Y Zhong; Fiona E Lovegrove; Christopher M Graham; Kevin C Kain
Journal:  Am J Trop Med Hyg       Date:  2003-12       Impact factor: 2.345

View more
  6 in total

1.  Ultra-sensitive detection of Plasmodium falciparum by amplification of multi-copy subtelomeric targets.

Authors:  Natalie Hofmann; Felista Mwingira; Seif Shekalaghe; Leanne J Robinson; Ivo Mueller; Ingrid Felger
Journal:  PLoS Med       Date:  2015-03-03       Impact factor: 11.069

2.  Dataset of natural antisense transcripts in P. vivax clinical isolates derived using custom designed strand-specific microarray.

Authors:  P A Boopathi; Amit Kumar Subudhi; Shilpi Garg; Sheetal Middha; Jyoti Acharya; Deepak Pakalapati; Vishal Saxena; Mohammed Aiyaz; Bipin Chand; Raja C Mugasimangalam; Sanjay K Kochar; Parmendra Sirohi; Dhanpat K Kochar; Ashis Das
Journal:  Genom Data       Date:  2014-07-11

3.  An in vivo transcriptome data set of natural antisense transcripts from Plasmodium falciparum clinical isolates.

Authors:  Amit Kumar Subudhi; P A Boopathi; Shilpi Garg; Sheetal Middha; Jyoti Acharya; Deepak Pakalapati; Vishal Saxena; Mohammed Aiyaz; Harsha B Orekondy; Raja C Mugasimangalam; Paramendra Sirohi; Sanjay K Kochar; Dhanpat K Kochar; Ashis Das
Journal:  Genom Data       Date:  2014-10-29

4.  A cross strain Plasmodium falciparum microarray optimized for the transcriptome analysis of Plasmodium falciparum patient derived isolates.

Authors:  Amit Kumar Subudhi; P A Boopathi; Sheetal Middha; Jyoti Acharya; Sudha Narayana Rao; Raja C Mugasimangalam; Paramendra Sirohi; Sanjay K Kochar; Dhanpat K Kochar; Ashis Das
Journal:  Genom Data       Date:  2016-07-20

5.  Reduction of Sphingosine Kinase 1 Phosphorylation and Activity in Plasmodium-Infected Erythrocytes.

Authors:  Raj Kumar Sah; Soumya Pati; Monika Saini; Pon Arunachalam Boopathi; Sanjay Kumar Kochar; Dhanpat Kumar Kochar; Ashis Das; Shailja Singh
Journal:  Front Cell Dev Biol       Date:  2020-03-03

Review 6.  Diagnostic Methods for Non-Falciparum Malaria.

Authors:  Alba Marina Gimenez; Rodolfo F Marques; Matías Regiart; Daniel Youssef Bargieri
Journal:  Front Cell Infect Microbiol       Date:  2021-06-17       Impact factor: 5.293

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.