Literature DB >> 23812809

Rhodopirellula rosea sp. nov., a novel bacterium isolated from an ark clam Scapharca broughtonii.

Seong Woon Roh1, Hae-Won Lee, Kyung June Yim, Na-Ri Shin, Jina Lee, Tae Woong Whon, Na-Lae Lim, Daekyung Kim, Jin-Woo Bae.   

Abstract

A novel Gram-negative, motile, and ovoid-shaped strain, LHWP3(T), which belonged to the family Planctomycetaceae in the phylum Planctomycetes, was isolated from a dead ark clam Scapharca broughtonii collected during a mass mortality event on the south coast of Korea. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the isolate was most closely related to the type strain of Rhodopirellula baltica, with a shared 16S rRNA gene sequence similarity of 94.8%. The isolate grew optimally at 30°C in 4-6% (w/v) NaCl, and at pH 7. The major isoprenoid quinone was menaquinone-6 (MK-6). The dominant polar lipids were phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, and unidentified polar lipids. The predominant cellular fatty acids were C16:0, C18:1 ω9c, and C18:0. The genomic DNA G+C content of strain LHWP3(T) was 53.0 mol%. Based on polyphasic taxonomic analyses, strain LHWP3(T) should be classified as a novel species in the genus Rhodopirellula in the family Planctomycetaceae, for which the name Rhodopirellula rosea sp. nov. is proposed. The type strain is LHWP3(T) (=KACC 15560(T) =JCM 17759(T)).

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Year:  2013        PMID: 23812809     DOI: 10.1007/s12275-013-3210-x

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  10 in total

1.  A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature.

Authors:  J M Gonzalez; C Saiz-Jimenez
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

2.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.

Authors:  Ok-Sun Kim; Yong-Joon Cho; Kihyun Lee; Seok-Hwan Yoon; Mincheol Kim; Hyunsoo Na; Sang-Cheol Park; Yoon Seong Jeon; Jae-Hak Lee; Hana Yi; Sungho Won; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2011-11-25       Impact factor: 2.747

Review 3.  Intracellular compartmentation in planctomycetes.

Authors:  John A Fuerst
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

4.  The Use of Semi-solid Agar for the Detection of Bacterial Motility.

Authors:  R P Tittsler; L A Sandholzer
Journal:  J Bacteriol       Date:  1936-06       Impact factor: 3.490

5.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

Review 7.  Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication.

Authors:  M D Collins; D Jones
Journal:  Microbiol Rev       Date:  1981-06

8.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

9.  Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov. and emended description of the genus Pirellula.

Authors:  Heinz Schlesner; Christina Rensmann; Brian J Tindall; Dörte Gade; Ralf Rabus; Stefan Pfeiffer; Peter Hirsch
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

10.  Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.

Authors:  Seong Woon Roh; Youlboong Sung; Young-Do Nam; Ho-Won Chang; Kyoung-Ho Kim; Jung-Hoon Yoon; Che Ok Jeon; Hee-Mock Oh; Jin-Woo Bae
Journal:  J Microbiol       Date:  2008-02       Impact factor: 3.422

  10 in total
  6 in total

1.  Bacterial and Archaeal Diversity in Hypersaline Cyanobacterial Mats Along a Transect in the Intertidal Flats of the Sultanate of Oman.

Authors:  Janina C Vogt; Raeid M M Abed; Dirk C Albach; Katarzyna A Palinska
Journal:  Microb Ecol       Date:  2017-07-24       Impact factor: 4.552

2.  Descriptions of Roseiconus nitratireducens gen. nov. sp. nov. and Roseiconus lacunae sp. nov.

Authors:  Dhanesh Kumar; Gaurav Kumar; Jagadeeshwari Uppada; Shabbir Ahmed; Chintalapati Sasikala; Chintalapati Venkata Ramana
Journal:  Arch Microbiol       Date:  2020-10-12       Impact factor: 2.552

3.  Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments.

Authors:  Marina Žure; Antonio Fernandez-Guerra; Colin B Munn; Jens Harder
Journal:  ISME J       Date:  2016-11-01       Impact factor: 10.302

4.  Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish.

Authors:  Su-Won Jeong; Jeong Eun Han; June-Young Lee; Ji-Ho Yoo; Do-Yeon Kim; In Chul Jeong; Jee-Won Choi; Yun-Seok Jeong; Jae-Yun Lee; So-Yeon Lee; Euon Jung Tak; Hojun Sung; Hyun Sik Kim; Pil Soo Kim; Dong-Wook Hyun; Jin-Woo Bae
Journal:  J Microbiol       Date:  2022-04-18       Impact factor: 3.422

Review 5.  The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes.

Authors:  Inês Rosado Vitorino; Olga Maria Lage
Journal:  Antonie Van Leeuwenhoek       Date:  2022-01-17       Impact factor: 2.271

6.  Acinetobacter apis sp. nov., isolated from the intestinal tract of a honey bee, Apis mellifera.

Authors:  Pil Soo Kim; Na-Ri Shin; Joon Yong Kim; Ji-Hyun Yun; Dong-Wook Hyun; Jin-Woo Bae
Journal:  J Microbiol       Date:  2014-08-01       Impact factor: 3.422

  6 in total

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