Literature DB >> 23805735

Introductory lecture: basic quantities in model biomembranes.

John F Nagle1.   

Abstract

One of the many aspects of membrane biophysics dealt with in this Faraday Discussion regards the material moduli that describe energies at a supramolecular level. This introductory lecture first critically reviews differences in reported numerical values of the bending modulus K(C), which is a central property for the biologically important flexibility of membranes. It is speculated that there may be a reason that the shape analysis method tends to give larger values of K(C) than the micromechanical manipulation method or the more recent X-ray method that agree very well with each other. Another theme of membrane biophysics is the use of simulations to provide exquisite detail of structures and processes. This lecture critically reviews the application of atomic level simulations to the quantitative structure of simple single component lipid bilayers and diagnostics are introduced to evaluate simulations. Another theme of this Faraday Discussion was lateral heterogeneity in biomembranes with many different lipids. Coarse grained simulations and analytical theories promise to synergistically enhance experimental studies when their interaction parameters are tuned to agree with experimental data, such as the slopes of experimental tie lines in ternary phase diagrams. Finally, attention is called to contributions that add relevant biological molecules to bilayers and to contributions that study the exciting shape changes and different non-bilayer structures with different lipids.

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Year:  2013        PMID: 23805735      PMCID: PMC3703863          DOI: 10.1039/c2fd20121f

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  87 in total

1.  Liquid domains in vesicles investigated by NMR and fluorescence microscopy.

Authors:  S L Veatch; I V Polozov; K Gawrisch; S L Keller
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

2.  Models to analyze small-angle neutron scattering from unilamellar lipid vesicles.

Authors:  Norbert Kucerka; John F Nagle; Scott E Feller; Pavol Balgavý
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-05-06

3.  Inverse lyotropic phases of lipids and membrane curvature.

Authors:  G C Shearman; O Ces; R H Templer; J M Seddon
Journal:  J Phys Condens Matter       Date:  2006-06-28       Impact factor: 2.333

4.  Cell cycle dependent changes in membrane stored curvature elastic energy: evidence from lipidomic studies.

Authors:  Charlotte V Hague; Anthony D Postle; George S Attard; Marcus K Dymond
Journal:  Faraday Discuss       Date:  2013       Impact factor: 4.008

5.  Physical properties of mixed bilayers containing lamellar and nonlamellar lipids: insights from coarse-grain molecular dynamics simulations.

Authors:  Mario Orsi; Jonathan W Essex
Journal:  Faraday Discuss       Date:  2013       Impact factor: 4.008

6.  Area/lipid of bilayers from NMR.

Authors:  J F Nagle
Journal:  Biophys J       Date:  1993-05       Impact factor: 4.033

7.  The mechanism of lamellar-to-inverted hexagonal phase transitions in phosphatidylethanolamine: implications for membrane fusion mechanisms.

Authors:  D P Siegel; R M Epand
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  Structure and elasticity of lipid membranes with genistein and daidzein bioflavinoids using X-ray scattering and MD simulations.

Authors:  Mohit Raghunathan; Yuriy Zubovski; Richard M Venable; Richard W Pastor; John F Nagle; Stephanie Tristram-Nagle
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

10.  Effect of the HIV-1 fusion peptide on the mechanical properties and leaflet coupling of lipid bilayers.

Authors:  P Shchelokovskyy; S Tristram-Nagle; R Dimova
Journal:  New J Phys       Date:  2011-02       Impact factor: 3.729

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  34 in total

1.  A Practical Implicit Membrane Potential for NMR Structure Calculations of Membrane Proteins.

Authors:  Ye Tian; Charles D Schwieters; Stanley J Opella; Francesca M Marassi
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

2.  Membrane Morphologies Induced by Arc-Shaped Scaffolds Are Determined by Arc Angle and Coverage.

Authors:  Francesco Bonazzi; Thomas R Weikl
Journal:  Biophys J       Date:  2019-02-26       Impact factor: 4.033

Review 3.  Binding equilibrium and kinetics of membrane-anchored receptors and ligands in cell adhesion: Insights from computational model systems and theory.

Authors:  Thomas R Weikl; Jinglei Hu; Guang-Kui Xu; Reinhard Lipowsky
Journal:  Cell Adh Migr       Date:  2016-06-13       Impact factor: 3.405

4.  Determination of bending rigidity and tilt modulus of lipid membranes from real-space fluctuation analysis of molecular dynamics simulations.

Authors:  M Doktorova; D Harries; G Khelashvili
Journal:  Phys Chem Chem Phys       Date:  2017-06-28       Impact factor: 3.676

5.  Scaling relationships for the elastic moduli and viscosity of mixed lipid membranes.

Authors:  Elizabeth G Kelley; Paul D Butler; Rana Ashkar; Robert Bradbury; Michihiro Nagao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-03       Impact factor: 11.205

6.  Local and global force balance for diffusiophoretic transport.

Authors:  S Marbach; H Yoshida; L Bocquet
Journal:  J Fluid Mech       Date:  2020-04-01       Impact factor: 3.627

7.  Backbone structure of Yersinia pestis Ail determined in micelles by NMR-restrained simulated annealing with implicit membrane solvation.

Authors:  Francesca M Marassi; Yi Ding; Charles D Schwieters; Ye Tian; Yong Yao
Journal:  J Biomol NMR       Date:  2015-07-05       Impact factor: 2.835

8.  Structural Insights into the Yersinia pestis Outer Membrane Protein Ail in Lipid Bilayers.

Authors:  Samit Kumar Dutta; Yong Yao; Francesca M Marassi
Journal:  J Phys Chem B       Date:  2017-08-04       Impact factor: 2.991

Review 9.  Membrane remodeling and mechanics: Experiments and simulations of α-Synuclein.

Authors:  Ana West; Benjamin E Brummel; Anthony R Braun; Elizabeth Rhoades; Jonathan N Sachs
Journal:  Biochim Biophys Acta       Date:  2016-03-10

10.  Flowing droplet interface bilayers: A microfluidic tool to control droplet trajectories and to study mechanical properties of unsupported lipid bilayers.

Authors:  Cornelia Walter; Ralf Seemann; Jean-Baptiste Fleury
Journal:  Biomicrofluidics       Date:  2020-07-28       Impact factor: 2.800

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