Literature DB >> 23796415

Development of a practical metabolite identification technique for non-targeted metabolomics.

Tairo Ogura1, Takeshi Bamba, Eiichiro Fukusaki.   

Abstract

Metabolite identification is one of the major challenges of non-targeted metabolomics involving liquid chromatography coupled with mass spectrometry (LC-MS). Compound databases contain enormous numbers of records, which makes compound identification difficult in practice because each search will return a large number of candidates. We therefore developed a practical compound identification system using LC-MS with high mass accuracy and MS(n) capability, combined with a compound database. A large number of candidates were evaluated by score calculation based on a combination of formulae and spectral assignments. Here, we demonstrate this method using green tea extract as a model sample. We applied our approach to predict the structures of compounds of interest, and the correct identification of several candidates was confirmed by comparisons to analysis of chemical standards.
Copyright © 2013. Published by Elsevier B.V.

Keywords:  IT-TOF-MS; Metabolic profiling; Metabolomics

Mesh:

Substances:

Year:  2013        PMID: 23796415     DOI: 10.1016/j.chroma.2013.05.054

Source DB:  PubMed          Journal:  J Chromatogr A        ISSN: 0021-9673            Impact factor:   4.759


  4 in total

1.  Method for the Compound Annotation of Conjugates in Nontargeted Metabolomics Using Accurate Mass Spectrometry, Multistage Product Ion Spectra and Compound Database Searching.

Authors:  Tairo Ogura; Takeshi Bamba; Akihiro Tai; Eiichiro Fukusaki
Journal:  Mass Spectrom (Tokyo)       Date:  2015-03-26

2.  Metabolite fingerprinting of pennycress (Thlaspi arvense L.) embryos to assess active pathways during oil synthesis.

Authors:  Enkhtuul Tsogtbaatar; Jean-Christophe Cocuron; Marcos Corchado Sonera; Ana Paula Alonso
Journal:  J Exp Bot       Date:  2015-02-22       Impact factor: 6.992

Review 3.  Recent Advances in the Application of Metabolomics to Studies of Biogenic Volatile Organic Compounds (BVOC) Produced by Plant.

Authors:  Yoko Iijima
Journal:  Metabolites       Date:  2014-08-21

4.  Metabolite Profiling and Classification of Developing Styrax tonkinensis Kernels.

Authors:  Qikui Wu; Xue Zhao; Chen Chen; Zihan Zhang; Fangyuan Yu
Journal:  Metabolites       Date:  2020-01-01
  4 in total

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