Literature DB >> 23795814

Mutational analysis of 48G7 reveals that somatic hypermutation affects both antibody stability and binding affinity.

Sophie B Sun1, Shiladitya Sen, Nam-Jung Kim, Thomas J Magliery, Peter G Schultz, Feng Wang.   

Abstract

The monoclonal antibody 48G7 differs from its germline precursor by 10 somatic mutations, a number of which appear to be functionally silent. We analyzed the effects of individual somatic mutations and combinations thereof on both antibody binding affinity and thermal stability. Individual somatic mutations that enhance binding affinity to hapten decrease the stability of the germline antibody; combining these binding mutations produced a mutant with high affinity for hapten but exceptionally low stability. Adding back each of the remaining somatic mutations restored thermal stability. These results, in conjunction with recently published studies, suggest an expanded role for somatic hypermutation in which both binding affinity and stability are optimized during clonal selection.

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Year:  2013        PMID: 23795814      PMCID: PMC3773045          DOI: 10.1021/ja402927u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  Molecular dynamics and free-energy calculations applied to affinity maturation in antibody 48G7.

Authors:  L T Chong; Y Duan; L Wang; I Massova; P A Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  A comparative analysis of the immunological evolution of antibody 28B4.

Authors:  J Yin; E C Mundorff; P L Yang; K U Wendt; D Hanway; R C Stevens; P G Schultz
Journal:  Biochemistry       Date:  2001-09-11       Impact factor: 3.162

Review 3.  The chemistry of the antibody molecule.

Authors:  Peter G Schultz; Jun Yin; Richard A Lerner
Journal:  Angew Chem Int Ed Engl       Date:  2002-12-02       Impact factor: 15.336

4.  Structural plasticity and the evolution of antibody affinity and specificity.

Authors:  Jun Yin; Albert E Beuscher; Scott E Andryski; Raymond C Stevens; Peter G Schultz
Journal:  J Mol Biol       Date:  2003-07-18       Impact factor: 5.469

Review 5.  The role of somatic hypermutation in the generation of antibody diversity.

Authors:  D L French; R Laskov; M D Scharff
Journal:  Science       Date:  1989-06-09       Impact factor: 47.728

6.  Structural insights into the evolution of an antibody combining site.

Authors:  G J Wedemayer; P A Patten; L H Wang; P G Schultz; R C Stevens
Journal:  Science       Date:  1997-06-13       Impact factor: 47.728

7.  Antibody diversity: somatic hypermutation of rearranged VH genes.

Authors:  S Kim; M Davis; E Sinn; P Patten; L Hood
Journal:  Cell       Date:  1981-12       Impact factor: 41.582

8.  The immunological evolution of catalysis.

Authors:  P A Patten; N S Gray; P L Yang; C B Marks; G J Wedemayer; J J Boniface; R C Stevens; P G Schultz
Journal:  Science       Date:  1996-02-23       Impact factor: 47.728

9.  Crystal structures of the free and liganded form of an esterolytic catalytic antibody.

Authors:  G J Wedemayer; L H Wang; P A Patten; P G Schultz; R C Stevens
Journal:  J Mol Biol       Date:  1997-05-02       Impact factor: 5.469

Review 10.  Molecular mechanisms of antibody somatic hypermutation.

Authors:  Javier M Di Noia; Michael S Neuberger
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

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  13 in total

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Authors:  Kathryn E Tiller; Lijuan Li; Sandeep Kumar; Mark C Julian; Shekhar Garde; Peter M Tessier
Journal:  J Biol Chem       Date:  2017-08-04       Impact factor: 5.157

2.  Co-evolution of affinity and stability of grafted amyloid-motif domain antibodies.

Authors:  Mark C Julian; Christine C Lee; Kathryn E Tiller; Lilia A Rabia; Evan K Day; Arthur J Schick; Peter M Tessier
Journal:  Protein Eng Des Sel       Date:  2015-09-19       Impact factor: 1.650

3.  Augmented Binary Substitution: Single-pass CDR germ-lining and stabilization of therapeutic antibodies.

Authors:  Sue Townsend; Brian J Fennell; James R Apgar; Matthew Lambert; Barry McDonnell; Joanne Grant; Jason Wade; Edward Franklin; Niall Foy; Deirdre Ní Shúilleabháin; Conor Fields; Alfredo Darmanin-Sheehan; Amy King; Janet E Paulsen; Timothy P Hickling; Lioudmila Tchistiakova; Orla Cunningham; William J J Finlay
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

4.  Prevalence and gene characteristics of antibodies with cofactor-induced HIV-1 specificity.

Authors:  Maxime Lecerf; Tobias Scheel; Anastas D Pashov; Annaelle Jarossay; Delphine Ohayon; Cyril Planchais; Stephane Mesnage; Claudia Berek; Srinivas V Kaveri; Sébastien Lacroix-Desmazes; Jordan D Dimitrov
Journal:  J Biol Chem       Date:  2015-01-06       Impact factor: 5.157

5.  Protein folding and binding can emerge as evolutionary spandrels through structural coupling.

Authors:  Michael Manhart; Alexandre V Morozov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

6.  A Combination of Structural and Empirical Analyses Delineates the Key Contacts Mediating Stability and Affinity Increases in an Optimized Biotherapeutic Single-chain Fv (scFv).

Authors:  Chao Tu; Virginie Terraube; Amy Sze Pui Tam; Wayne Stochaj; Brian J Fennell; Laura Lin; Mark Stahl; Edward R LaVallie; Will Somers; William J J Finlay; Lydia Mosyak; Joel Bard; Orla Cunningham
Journal:  J Biol Chem       Date:  2015-10-29       Impact factor: 5.157

7.  An antibody with a variable-region coiled-coil "knob" domain.

Authors:  Yong Zhang; Devrishi Goswami; Danling Wang; Tsung-Shing Andrew Wang; Shiladitya Sen; Thomas J Magliery; Patrick R Griffin; Feng Wang; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2013-11-19       Impact factor: 15.336

8.  A general approach to antibody thermostabilization.

Authors:  Audrey D McConnell; Xue Zhang; John L Macomber; Betty Chau; Joseph C Sheffer; Sorena Rahmanian; Eric Hare; Vladimir Spasojevic; Robert A Horlick; David J King; Peter M Bowers
Journal:  MAbs       Date:  2014       Impact factor: 5.857

9.  Introduction of germline residues improves the stability of anti-HIV mAb 2G12-IgM.

Authors:  Veronika Chromikova; Alexander Mader; Stefan Hofbauer; Christoph Göbl; Tobias Madl; Johannes S Gach; Stefan Bauernfried; Paul G Furtmüller; Donald N Forthal; Lukas Mach; Christian Obinger; Renate Kunert
Journal:  Biochim Biophys Acta       Date:  2015-03-05

10.  Facile Affinity Maturation of Antibody Variable Domains Using Natural Diversity Mutagenesis.

Authors:  Kathryn E Tiller; Ratul Chowdhury; Tong Li; Seth D Ludwig; Sabyasachi Sen; Costas D Maranas; Peter M Tessier
Journal:  Front Immunol       Date:  2017-09-04       Impact factor: 7.561

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