Literature DB >> 23795113

5-Isopropyl-5-methyl-2-sulfanylidene-imidazolidin-4-one.

Masaki Ichitani1, Soh-Ichi Kitoh, Shuhei Fujinami, Mitsuhiro Suda, Mitsunori Honda, Ko-Ki Kunimoto.   

Abstract

In the title compound, C7H12N2OS, the 2-sulfanylideneimidazolidin-4-one moiety is nearly planar, with a maximum deviation of 0.054 (2) Å. In the crystal, a pair of N-H⋯O hydrogen bonds and a pair of N-H⋯S hydrogen bonds each form a centrosymmetric ring with an R 2 (2)(8) graph-set motif. The enanti-omeric R and S mol-ecules are alternately linked into a tape along [1-10] via these pairs of hydrogen bonds.

Entities:  

Year:  2013        PMID: 23795113      PMCID: PMC3685094          DOI: 10.1107/S1600536813013639

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications and the biological activity of 2-sulfanylideneimidazolidin-4-ones, see: Marton et al. (1993 ▶). For the crystal structures of related compounds, see: Devillanova et al. (1987 ▶); Ogawa et al. (2009 ▶); Walker et al. (1969 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For hydrogen-bond motifs, see: Etter (1990 ▶). For the synthetic procedure, see: Wang et al. (2006 ▶).

Experimental

Crystal data

C7H12N2OS M = 172.26 Monoclinic, a = 5.8317 (5) Å b = 9.2114 (8) Å c = 16.8967 (16) Å β = 95.855 (3)° V = 902.92 (14) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 123 K 0.20 × 0.10 × 0.04 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Rigaku, 1998 ▶) T min = 0.795, T max = 0.988 9484 measured reflections 2051 independent reflections 1660 reflections with F 2 > 2σ(F 2) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.126 S = 1.14 2051 reflections 111 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.63 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Rigaku, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR2008 in Il Milione (Burla et al., 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: CrystalStructure (Rigaku, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813013639/is5273sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013639/is5273Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013639/is5273Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H12N2OSF(000) = 368
Mr = 172.26Dx = 1.267 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 2692 reflections
a = 5.8317 (5) Åθ = 3.5–27.5°
b = 9.2114 (8) ŵ = 0.31 mm1
c = 16.8967 (16) ÅT = 123 K
β = 95.855 (3)°Plate, colorless
V = 902.92 (14) Å30.20 × 0.10 × 0.04 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer1660 reflections with F2 > 2σ(F2)
Detector resolution: 7.314 pixels mm-1Rint = 0.038
ω scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (REQAB; Rigaku, 1998)h = −7→7
Tmin = 0.795, Tmax = 0.988k = −11→10
9484 measured reflectionsl = −21→21
2051 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0462P)2 + 1.0263P] where P = (Fo2 + 2Fc2)/3
2051 reflections(Δ/σ)max < 0.001
111 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.31 e Å3
Primary atom site location: structure-invariant direct methods
Experimental. m.p. 145 °C; 1H NMR (500 MHz, CDCl3): δ 9.11 (br s, 1H), 8.09 (br s, 1H), 2.07 (sep, 1H, J = 6.9 Hz), 1.46 (s, 3H), 1.03 (d, 3H, J = 6.9 Hz), 0.95 (d, 3H, J = 6.9 Hz); 13C NMR (125 MHz, CDCl3): δ 181.13, 177.71, 70.15, 34.82, 20.97, 16.86, 16.42; IR (KBr, cm-1): 3182 (ν(N—H)), 1743 (ν(C═O)), 1532 (ν(C—N)+δ(N—H)).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
S1−0.05936 (9)0.28891 (6)0.42364 (3)0.02414 (18)
O10.6264 (3)0.09152 (17)0.58845 (10)0.0278 (4)
N10.2019 (4)0.3572 (2)0.55956 (10)0.0204 (4)
N20.3053 (4)0.1562 (2)0.50439 (11)0.0244 (5)
C10.1488 (4)0.2702 (3)0.49775 (12)0.0192 (5)
C20.4673 (4)0.1723 (3)0.56850 (13)0.0219 (5)
C30.4068 (4)0.3105 (3)0.61121 (12)0.0190 (5)
C40.6026 (4)0.4209 (3)0.61059 (14)0.0259 (5)
C50.3484 (4)0.2730 (3)0.69649 (12)0.0225 (5)
C60.1683 (5)0.1524 (3)0.69600 (14)0.0300 (6)
C70.2715 (5)0.4046 (3)0.74022 (15)0.0331 (6)
H10.140 (5)0.431 (4)0.5650 (16)0.026 (7)*
H20.320 (6)0.086 (4)0.468 (2)0.049 (9)*
H4A0.73350.38960.64760.0310*
H4B0.54900.51610.62690.0310*
H4C0.65060.42770.55680.0310*
H50.49290.23610.72680.0270*
H6A0.22760.06430.67260.0360*
H6B0.02650.18330.66440.0360*
H6C0.13550.13210.75070.0360*
H7A0.13590.44760.71000.0397*
H7B0.39660.47610.74600.0397*
H7C0.23230.37550.79300.0397*
U11U22U33U12U13U23
S10.0281 (3)0.0216 (3)0.0209 (3)0.0062 (3)−0.0060 (2)−0.0030 (2)
O10.0281 (9)0.0245 (9)0.0290 (9)0.0104 (7)−0.0057 (7)−0.0047 (7)
N10.0255 (10)0.0156 (9)0.0193 (9)0.0067 (8)−0.0011 (7)−0.0018 (7)
N20.0315 (11)0.0185 (9)0.0219 (10)0.0086 (8)−0.0039 (8)−0.0053 (8)
C10.0223 (10)0.0177 (10)0.0171 (10)0.0037 (8)0.0005 (8)0.0013 (8)
C20.0245 (11)0.0192 (11)0.0212 (11)0.0008 (9)−0.0016 (8)−0.0017 (8)
C30.0205 (10)0.0178 (10)0.0179 (10)0.0024 (8)−0.0017 (8)−0.0007 (8)
C40.0254 (11)0.0231 (11)0.0286 (12)−0.0014 (9)0.0001 (9)−0.0003 (9)
C50.0223 (11)0.0258 (11)0.0188 (10)−0.0012 (9)−0.0004 (8)0.0001 (9)
C60.0306 (12)0.0296 (13)0.0295 (12)−0.0072 (10)0.0010 (10)0.0047 (10)
C70.0376 (14)0.0332 (14)0.0286 (13)0.0006 (11)0.0035 (10)−0.0060 (10)
S1—C11.662 (2)N2—H20.91 (4)
O1—C21.210 (3)C4—H4A0.980
N1—C11.328 (3)C4—H4B0.980
N1—C31.470 (3)C4—H4C0.980
N2—C11.389 (3)C5—H51.000
N2—C21.371 (3)C6—H6A0.980
C2—C31.523 (3)C6—H6B0.980
C3—C41.529 (3)C6—H6C0.980
C3—C51.553 (3)C7—H7A0.980
C5—C61.528 (4)C7—H7B0.980
C5—C71.512 (4)C7—H7C0.980
N1—H10.78 (3)
C1—N1—C3113.63 (18)C3—C4—H4A109.471
C1—N2—C2112.12 (18)C3—C4—H4B109.469
S1—C1—N1128.62 (17)C3—C4—H4C109.469
S1—C1—N2124.27 (16)H4A—C4—H4B109.470
N1—C1—N2107.11 (18)H4A—C4—H4C109.476
O1—C2—N2126.9 (2)H4B—C4—H4C109.473
O1—C2—C3126.2 (2)C3—C5—H5107.349
N2—C2—C3106.89 (18)C6—C5—H5107.356
N1—C3—C2100.18 (16)C7—C5—H5107.359
N1—C3—C4111.34 (17)C5—C6—H6A109.476
N1—C3—C5111.94 (17)C5—C6—H6B109.471
C2—C3—C4110.09 (18)C5—C6—H6C109.465
C2—C3—C5109.67 (18)H6A—C6—H6B109.480
C4—C3—C5112.89 (17)H6A—C6—H6C109.472
C3—C5—C6111.88 (17)H6B—C6—H6C109.463
C3—C5—C7112.26 (19)C5—C7—H7A109.475
C6—C5—C7110.4 (2)C5—C7—H7B109.480
C1—N1—H1123.2 (19)C5—C7—H7C109.472
C3—N1—H1122.7 (19)H7A—C7—H7B109.474
C1—N2—H2126 (2)H7A—C7—H7C109.465
C2—N2—H2121 (2)H7B—C7—H7C109.461
C1—N1—C3—C2−1.1 (3)O1—C2—C3—C5−61.8 (3)
C1—N1—C3—C4115.27 (19)N2—C2—C3—N1−0.6 (2)
C1—N1—C3—C5−117.31 (18)N2—C2—C3—C4−117.96 (18)
C3—N1—C1—S1−176.53 (17)N2—C2—C3—C5117.24 (18)
C3—N1—C1—N22.4 (3)N1—C3—C5—C658.7 (3)
C1—N2—C2—O1−178.9 (2)N1—C3—C5—C7−66.0 (2)
C1—N2—C2—C32.1 (3)C2—C3—C5—C6−51.5 (2)
C2—N2—C1—S1176.16 (17)C2—C3—C5—C7−176.24 (15)
C2—N2—C1—N1−2.9 (3)C4—C3—C5—C6−174.68 (16)
O1—C2—C3—N1−179.6 (2)C4—C3—C5—C760.6 (3)
O1—C2—C3—C463.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.78 (3)2.63 (3)3.383 (2)162 (3)
N2—H2···O1ii0.91 (4)1.93 (4)2.820 (3)166 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯S1i 0.78 (3)2.63 (3)3.383 (2)162 (3)
N2—H2⋯O1ii 0.91 (4)1.93 (4)2.820 (3)166 (3)

Symmetry codes: (i) ; (ii) .

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