| Literature DB >> 23795113 |
Masaki Ichitani1, Soh-Ichi Kitoh, Shuhei Fujinami, Mitsuhiro Suda, Mitsunori Honda, Ko-Ki Kunimoto.
Abstract
In the title compound, C7H12N2OS, the 2-sulfanylideneimidazolidin-4-one moiety is nearly planar, with a maximum deviation of 0.054 (2) Å. In the crystal, a pair of N-H⋯O hydrogen bonds and a pair of N-H⋯S hydrogen bonds each form a centrosymmetric ring with an R 2 (2)(8) graph-set motif. The enanti-omeric R and S mol-ecules are alternately linked into a tape along [1-10] via these pairs of hydrogen bonds.Entities:
Year: 2013 PMID: 23795113 PMCID: PMC3685094 DOI: 10.1107/S1600536813013639
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H12N2OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2692 reflections |
| θ = 3.5–27.5° | |
| µ = 0.31 mm−1 | |
| β = 95.855 (3)° | Plate, colorless |
| 0.20 × 0.10 × 0.04 mm | |
| Rigaku/MSC Mercury CCD diffractometer | 1660 reflections with |
| Detector resolution: 7.314 pixels mm-1 | |
| ω scans | θmax = 27.5°, θmin = 3.3° |
| Absorption correction: multi-scan ( | |
| 9484 measured reflections | |
| 2051 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2051 reflections | (Δ/σ)max < 0.001 |
| 111 parameters | Δρmax = 0.63 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Primary atom site location: structure-invariant direct methods |
| Experimental. m.p. 145 °C; 1H NMR (500 MHz, CDCl3): |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement was performed using all reflections. The weighted |
| S1 | −0.05936 (9) | 0.28891 (6) | 0.42364 (3) | 0.02414 (18) | |
| O1 | 0.6264 (3) | 0.09152 (17) | 0.58845 (10) | 0.0278 (4) | |
| N1 | 0.2019 (4) | 0.3572 (2) | 0.55956 (10) | 0.0204 (4) | |
| N2 | 0.3053 (4) | 0.1562 (2) | 0.50439 (11) | 0.0244 (5) | |
| C1 | 0.1488 (4) | 0.2702 (3) | 0.49775 (12) | 0.0192 (5) | |
| C2 | 0.4673 (4) | 0.1723 (3) | 0.56850 (13) | 0.0219 (5) | |
| C3 | 0.4068 (4) | 0.3105 (3) | 0.61121 (12) | 0.0190 (5) | |
| C4 | 0.6026 (4) | 0.4209 (3) | 0.61059 (14) | 0.0259 (5) | |
| C5 | 0.3484 (4) | 0.2730 (3) | 0.69649 (12) | 0.0225 (5) | |
| C6 | 0.1683 (5) | 0.1524 (3) | 0.69600 (14) | 0.0300 (6) | |
| C7 | 0.2715 (5) | 0.4046 (3) | 0.74022 (15) | 0.0331 (6) | |
| H1 | 0.140 (5) | 0.431 (4) | 0.5650 (16) | 0.026 (7)* | |
| H2 | 0.320 (6) | 0.086 (4) | 0.468 (2) | 0.049 (9)* | |
| H4A | 0.7335 | 0.3896 | 0.6476 | 0.0310* | |
| H4B | 0.5490 | 0.5161 | 0.6269 | 0.0310* | |
| H4C | 0.6506 | 0.4277 | 0.5568 | 0.0310* | |
| H5 | 0.4929 | 0.2361 | 0.7268 | 0.0270* | |
| H6A | 0.2276 | 0.0643 | 0.6726 | 0.0360* | |
| H6B | 0.0265 | 0.1833 | 0.6644 | 0.0360* | |
| H6C | 0.1355 | 0.1321 | 0.7507 | 0.0360* | |
| H7A | 0.1359 | 0.4476 | 0.7100 | 0.0397* | |
| H7B | 0.3966 | 0.4761 | 0.7460 | 0.0397* | |
| H7C | 0.2323 | 0.3755 | 0.7930 | 0.0397* |
| S1 | 0.0281 (3) | 0.0216 (3) | 0.0209 (3) | 0.0062 (3) | −0.0060 (2) | −0.0030 (2) |
| O1 | 0.0281 (9) | 0.0245 (9) | 0.0290 (9) | 0.0104 (7) | −0.0057 (7) | −0.0047 (7) |
| N1 | 0.0255 (10) | 0.0156 (9) | 0.0193 (9) | 0.0067 (8) | −0.0011 (7) | −0.0018 (7) |
| N2 | 0.0315 (11) | 0.0185 (9) | 0.0219 (10) | 0.0086 (8) | −0.0039 (8) | −0.0053 (8) |
| C1 | 0.0223 (10) | 0.0177 (10) | 0.0171 (10) | 0.0037 (8) | 0.0005 (8) | 0.0013 (8) |
| C2 | 0.0245 (11) | 0.0192 (11) | 0.0212 (11) | 0.0008 (9) | −0.0016 (8) | −0.0017 (8) |
| C3 | 0.0205 (10) | 0.0178 (10) | 0.0179 (10) | 0.0024 (8) | −0.0017 (8) | −0.0007 (8) |
| C4 | 0.0254 (11) | 0.0231 (11) | 0.0286 (12) | −0.0014 (9) | 0.0001 (9) | −0.0003 (9) |
| C5 | 0.0223 (11) | 0.0258 (11) | 0.0188 (10) | −0.0012 (9) | −0.0004 (8) | 0.0001 (9) |
| C6 | 0.0306 (12) | 0.0296 (13) | 0.0295 (12) | −0.0072 (10) | 0.0010 (10) | 0.0047 (10) |
| C7 | 0.0376 (14) | 0.0332 (14) | 0.0286 (13) | 0.0006 (11) | 0.0035 (10) | −0.0060 (10) |
| S1—C1 | 1.662 (2) | N2—H2 | 0.91 (4) |
| O1—C2 | 1.210 (3) | C4—H4A | 0.980 |
| N1—C1 | 1.328 (3) | C4—H4B | 0.980 |
| N1—C3 | 1.470 (3) | C4—H4C | 0.980 |
| N2—C1 | 1.389 (3) | C5—H5 | 1.000 |
| N2—C2 | 1.371 (3) | C6—H6A | 0.980 |
| C2—C3 | 1.523 (3) | C6—H6B | 0.980 |
| C3—C4 | 1.529 (3) | C6—H6C | 0.980 |
| C3—C5 | 1.553 (3) | C7—H7A | 0.980 |
| C5—C6 | 1.528 (4) | C7—H7B | 0.980 |
| C5—C7 | 1.512 (4) | C7—H7C | 0.980 |
| N1—H1 | 0.78 (3) | ||
| C1—N1—C3 | 113.63 (18) | C3—C4—H4A | 109.471 |
| C1—N2—C2 | 112.12 (18) | C3—C4—H4B | 109.469 |
| S1—C1—N1 | 128.62 (17) | C3—C4—H4C | 109.469 |
| S1—C1—N2 | 124.27 (16) | H4A—C4—H4B | 109.470 |
| N1—C1—N2 | 107.11 (18) | H4A—C4—H4C | 109.476 |
| O1—C2—N2 | 126.9 (2) | H4B—C4—H4C | 109.473 |
| O1—C2—C3 | 126.2 (2) | C3—C5—H5 | 107.349 |
| N2—C2—C3 | 106.89 (18) | C6—C5—H5 | 107.356 |
| N1—C3—C2 | 100.18 (16) | C7—C5—H5 | 107.359 |
| N1—C3—C4 | 111.34 (17) | C5—C6—H6A | 109.476 |
| N1—C3—C5 | 111.94 (17) | C5—C6—H6B | 109.471 |
| C2—C3—C4 | 110.09 (18) | C5—C6—H6C | 109.465 |
| C2—C3—C5 | 109.67 (18) | H6A—C6—H6B | 109.480 |
| C4—C3—C5 | 112.89 (17) | H6A—C6—H6C | 109.472 |
| C3—C5—C6 | 111.88 (17) | H6B—C6—H6C | 109.463 |
| C3—C5—C7 | 112.26 (19) | C5—C7—H7A | 109.475 |
| C6—C5—C7 | 110.4 (2) | C5—C7—H7B | 109.480 |
| C1—N1—H1 | 123.2 (19) | C5—C7—H7C | 109.472 |
| C3—N1—H1 | 122.7 (19) | H7A—C7—H7B | 109.474 |
| C1—N2—H2 | 126 (2) | H7A—C7—H7C | 109.465 |
| C2—N2—H2 | 121 (2) | H7B—C7—H7C | 109.461 |
| C1—N1—C3—C2 | −1.1 (3) | O1—C2—C3—C5 | −61.8 (3) |
| C1—N1—C3—C4 | 115.27 (19) | N2—C2—C3—N1 | −0.6 (2) |
| C1—N1—C3—C5 | −117.31 (18) | N2—C2—C3—C4 | −117.96 (18) |
| C3—N1—C1—S1 | −176.53 (17) | N2—C2—C3—C5 | 117.24 (18) |
| C3—N1—C1—N2 | 2.4 (3) | N1—C3—C5—C6 | 58.7 (3) |
| C1—N2—C2—O1 | −178.9 (2) | N1—C3—C5—C7 | −66.0 (2) |
| C1—N2—C2—C3 | 2.1 (3) | C2—C3—C5—C6 | −51.5 (2) |
| C2—N2—C1—S1 | 176.16 (17) | C2—C3—C5—C7 | −176.24 (15) |
| C2—N2—C1—N1 | −2.9 (3) | C4—C3—C5—C6 | −174.68 (16) |
| O1—C2—C3—N1 | −179.6 (2) | C4—C3—C5—C7 | 60.6 (3) |
| O1—C2—C3—C4 | 63.0 (3) |
| H··· | ||||
| N1—H1···S1i | 0.78 (3) | 2.63 (3) | 3.383 (2) | 162 (3) |
| N2—H2···O1ii | 0.91 (4) | 1.93 (4) | 2.820 (3) | 166 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯S1i | 0.78 (3) | 2.63 (3) | 3.383 (2) | 162 (3) |
| N2—H2⋯O1ii | 0.91 (4) | 1.93 (4) | 2.820 (3) | 166 (3) |
Symmetry codes: (i) ; (ii) .