Literature DB >> 23795107

1,3-Bis(prop-2-yn-1-yl)-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Zahra Afrakssou1, Amal Haoudi, Frédéric Capet, Ahmed Mazzah, Christian Rolando, Lahcen El Ammari.   

Abstract

In the title compound, C21H12N2O3, the fused-ring system is roughly planar, the largest deviation from the mean plane being 0.084 (2) Å. The two n class="Chemical">prop-2-yn-1-yl groups are almost perpendicular to the fused ring plane, making C-C-N-C torsion angles of -103.4 (2) and -105.3 (2)°, and point in opposite directions with respect to the plane. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2013        PMID: 23795107      PMCID: PMC3685088          DOI: 10.1107/S1600536813013688

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmacological activity and potential applications of anthra­quinones, see: Alves et al. (2004 ▶); Ellis et al. (2003 ▶); Boseggia et al. (2004 ▶); Mariappan & Basa (2011 ▶); Kadarkaraisamy et al. (2008 ▶). For similar compounds, see: Afrakssou et al. (2010 ▶, 2011 ▶); Guimarães et al. (2009 ▶).

Experimental

Crystal data

C21H12N2O3 M = 340.33 Monoclinic, a = 16.6972 (5) Å b = 4.5602 (1) Å c = 21.2500 (5) Å β = 96.352 (2)° V = 1608.10 (7) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.46 × 0.14 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer 20426 measured reflections 3177 independent reflections 2301 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.129 S = 1.02 3177 reflections 235 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAIn class="Chemical">NT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813013688/im2432sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013688/im2432Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013688/im2432Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H12N2O3F(000) = 704
Mr = 340.33Dx = 1.406 Mg m3
Monoclinic, P21/cMelting point: 463 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 16.6972 (5) ÅCell parameters from 3177 reflections
b = 4.5602 (1) Åθ = 2.5–26.0°
c = 21.2500 (5) ŵ = 0.10 mm1
β = 96.352 (2)°T = 296 K
V = 1608.10 (7) Å3Irregular shape, yellow
Z = 40.46 × 0.14 × 0.05 mm
Bruker APEXII CCD diffractometer2301 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
Graphite monochromatorθmax = 26.0°, θmin = 2.4°
φ and ω scansh = −20→19
20426 measured reflectionsk = −5→5
3177 independent reflectionsl = −26→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: difference Fourier map
wR(F2) = 0.129H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0555P)2 + 0.5235P] where P = (Fo2 + 2Fc2)/3
3177 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.27182 (12)0.6098 (4)0.40077 (9)0.0604 (5)
C20.28450 (15)0.4803 (6)0.46051 (10)0.0812 (7)
H20.24800.34270.47250.097*
C30.35059 (19)0.5550 (7)0.50163 (11)0.0980 (9)
H30.35810.47110.54170.118*
C40.40550 (18)0.7526 (7)0.48372 (12)0.1005 (9)
H40.45070.79950.51150.121*
C50.39427 (14)0.8828 (6)0.42474 (10)0.0811 (7)
H50.43201.01640.41300.097*
C60.32708 (12)0.8154 (4)0.38289 (8)0.0581 (5)
C70.31375 (10)0.9681 (4)0.32094 (8)0.0521 (5)
C80.24435 (9)0.8852 (4)0.27529 (8)0.0447 (4)
C90.18813 (10)0.6776 (4)0.29414 (8)0.0505 (4)
C100.20212 (12)0.5247 (4)0.35604 (9)0.0595 (5)
C110.22732 (9)1.0111 (4)0.21489 (8)0.0444 (4)
C120.15499 (10)0.9328 (4)0.17752 (8)0.0500 (4)
C130.09989 (11)0.7381 (4)0.19747 (10)0.0596 (5)
H130.05210.69550.17230.072*
C140.11783 (11)0.6094 (4)0.25560 (10)0.0603 (5)
H140.08220.47350.26960.072*
C150.21803 (11)1.2631 (4)0.12116 (9)0.0551 (5)
C160.09096 (12)1.0549 (5)0.06690 (9)0.0677 (6)
H16A0.07760.84900.06100.081*
H16B0.11331.12260.02930.081*
C170.01719 (12)1.2201 (5)0.07407 (9)0.0592 (5)
C18−0.04129 (13)1.3540 (5)0.07967 (11)0.0738 (6)
H18−0.08781.46040.08410.089*
C190.34510 (10)1.3565 (4)0.18615 (9)0.0546 (5)
H19A0.34651.50730.15410.066*
H19B0.35301.45110.22720.066*
C200.41099 (11)1.1519 (4)0.18097 (9)0.0565 (5)
C210.46571 (13)0.9943 (6)0.17751 (11)0.0821 (7)
H210.50920.86910.17480.099*
N10.15159 (9)1.0865 (4)0.12144 (7)0.0558 (4)
N20.26525 (8)1.2155 (3)0.17856 (7)0.0482 (4)
O10.35778 (9)1.1731 (4)0.31003 (6)0.0812 (5)
O20.15706 (10)0.3264 (3)0.36931 (8)0.0825 (5)
O30.23256 (9)1.4307 (4)0.07918 (6)0.0718 (4)
U11U22U33U12U13U23
C10.0692 (12)0.0584 (12)0.0556 (11)0.0081 (10)0.0164 (9)−0.0032 (9)
C20.1003 (18)0.0830 (16)0.0623 (13)0.0040 (14)0.0186 (13)0.0081 (12)
C30.126 (2)0.107 (2)0.0583 (14)0.0071 (19)−0.0008 (15)0.0138 (14)
C40.108 (2)0.119 (2)0.0669 (15)−0.0052 (19)−0.0214 (14)0.0100 (16)
C50.0779 (15)0.0963 (18)0.0649 (13)−0.0095 (13)−0.0110 (11)0.0053 (13)
C60.0610 (11)0.0617 (12)0.0516 (10)0.0051 (10)0.0058 (8)−0.0054 (9)
C70.0453 (10)0.0593 (11)0.0525 (10)−0.0035 (9)0.0084 (8)−0.0054 (9)
C80.0409 (9)0.0431 (9)0.0511 (9)0.0031 (7)0.0096 (7)−0.0088 (8)
C90.0474 (10)0.0460 (10)0.0600 (10)0.0002 (8)0.0138 (8)−0.0108 (9)
C100.0631 (12)0.0512 (11)0.0681 (12)0.0017 (9)0.0243 (10)−0.0045 (10)
C110.0377 (8)0.0418 (9)0.0541 (9)0.0030 (7)0.0073 (7)−0.0110 (8)
C120.0442 (9)0.0505 (10)0.0548 (10)0.0048 (8)0.0028 (7)−0.0144 (9)
C130.0439 (10)0.0633 (12)0.0702 (12)−0.0056 (9)0.0003 (8)−0.0207 (10)
C140.0505 (10)0.0568 (11)0.0754 (13)−0.0096 (9)0.0145 (9)−0.0127 (10)
C150.0545 (11)0.0581 (11)0.0528 (10)0.0102 (9)0.0059 (8)−0.0075 (10)
C160.0679 (13)0.0758 (14)0.0558 (11)0.0085 (11)−0.0094 (9)−0.0183 (10)
C170.0515 (11)0.0669 (13)0.0565 (10)−0.0073 (10)−0.0066 (8)−0.0058 (10)
C180.0527 (12)0.0854 (16)0.0807 (14)−0.0005 (12)−0.0038 (10)−0.0060 (13)
C190.0516 (10)0.0524 (11)0.0604 (10)−0.0036 (8)0.0082 (8)0.0000 (9)
C200.0461 (10)0.0659 (12)0.0573 (10)−0.0024 (9)0.0049 (8)−0.0042 (10)
C210.0526 (12)0.1004 (18)0.0918 (16)0.0151 (13)0.0003 (11)−0.0172 (14)
N10.0493 (9)0.0611 (10)0.0550 (9)0.0049 (7)−0.0038 (7)−0.0128 (8)
N20.0423 (8)0.0501 (8)0.0519 (8)0.0013 (6)0.0036 (6)−0.0032 (7)
O10.0712 (9)0.1062 (13)0.0632 (8)−0.0379 (9)−0.0060 (7)0.0079 (8)
O20.0878 (11)0.0711 (10)0.0930 (11)−0.0163 (9)0.0289 (9)0.0080 (9)
O30.0808 (10)0.0764 (10)0.0579 (8)0.0050 (8)0.0058 (7)0.0079 (8)
C1—C21.395 (3)C12—N11.378 (2)
C1—C61.397 (3)C12—C131.379 (3)
C1—C101.471 (3)C13—C141.370 (3)
C2—C31.373 (3)C13—H130.9300
C2—H20.9300C14—H140.9300
C3—C41.369 (4)C15—O31.219 (2)
C3—H30.9300C15—N11.371 (2)
C4—C51.381 (3)C15—N21.394 (2)
C4—H40.9300C16—N11.459 (2)
C5—C61.387 (3)C16—C171.466 (3)
C5—H50.9300C16—H16A0.9700
C6—C71.484 (3)C16—H16B0.9700
C7—O11.227 (2)C17—C181.169 (3)
C7—C81.476 (2)C18—H180.9300
C8—C111.406 (2)C19—C201.456 (3)
C8—C91.421 (2)C19—N21.473 (2)
C9—C141.390 (3)C19—H19A0.9700
C9—C101.484 (3)C19—H19B0.9700
C10—O21.229 (2)C20—C211.171 (3)
C11—N21.405 (2)C21—H210.9300
C11—C121.416 (2)
C2—C1—C6119.6 (2)N1—C12—C11107.92 (16)
C2—C1—C10120.4 (2)C13—C12—C11123.15 (18)
C6—C1—C10120.03 (18)C14—C13—C12117.79 (17)
C3—C2—C1120.3 (2)C14—C13—H13121.1
C3—C2—H2119.9C12—C13—H13121.1
C1—C2—H2119.9C13—C14—C9121.41 (18)
C4—C3—C2120.2 (2)C13—C14—H14119.3
C4—C3—H3119.9C9—C14—H14119.3
C2—C3—H3119.9O3—C15—N1126.71 (18)
C3—C4—C5120.5 (2)O3—C15—N2126.79 (18)
C3—C4—H4119.8N1—C15—N2106.50 (16)
C5—C4—H4119.8N1—C16—C17112.56 (15)
C4—C5—C6120.4 (2)N1—C16—H16A109.1
C4—C5—H5119.8C17—C16—H16A109.1
C6—C5—H5119.8N1—C16—H16B109.1
C5—C6—C1119.07 (19)C17—C16—H16B109.1
C5—C6—C7119.76 (19)H16A—C16—H16B107.8
C1—C6—C7121.15 (17)C18—C17—C16179.4 (3)
O1—C7—C8120.95 (17)C17—C18—H18180.0
O1—C7—C6119.40 (17)C20—C19—N2113.23 (15)
C8—C7—C6119.51 (16)C20—C19—H19A108.9
C11—C8—C9117.12 (15)N2—C19—H19A108.9
C11—C8—C7124.07 (15)C20—C19—H19B108.9
C9—C8—C7118.71 (16)N2—C19—H19B108.9
C14—C9—C8121.60 (18)H19A—C19—H19B107.7
C14—C9—C10117.17 (17)C21—C20—C19177.8 (2)
C8—C9—C10121.23 (16)C20—C21—H21180.0
O2—C10—C1120.4 (2)C15—N1—C12110.27 (15)
O2—C10—C9120.58 (19)C15—N1—C16123.02 (17)
C1—C10—C9118.97 (17)C12—N1—C16126.52 (17)
N2—C11—C8135.60 (15)C15—N2—C11109.78 (14)
N2—C11—C12105.52 (15)C15—N2—C19116.43 (15)
C8—C11—C12118.87 (16)C11—N2—C19133.40 (14)
N1—C12—C13128.92 (16)
C6—C1—C2—C30.3 (3)C9—C8—C11—C122.0 (2)
C10—C1—C2—C3178.5 (2)C7—C8—C11—C12−174.30 (15)
C1—C2—C3—C4−1.4 (4)N2—C11—C12—N10.18 (18)
C2—C3—C4—C51.2 (5)C8—C11—C12—N1179.18 (14)
C3—C4—C5—C60.1 (4)N2—C11—C12—C13−178.94 (15)
C4—C5—C6—C1−1.3 (4)C8—C11—C12—C130.1 (3)
C4—C5—C6—C7177.0 (2)N1—C12—C13—C14179.16 (18)
C2—C1—C6—C51.0 (3)C11—C12—C13—C14−1.9 (3)
C10—C1—C6—C5−177.15 (19)C12—C13—C14—C91.7 (3)
C2—C1—C6—C7−177.14 (18)C8—C9—C14—C130.4 (3)
C10—C1—C6—C74.7 (3)C10—C9—C14—C13−179.65 (17)
C5—C6—C7—O1−7.3 (3)N1—C16—C17—C1878 (22)
C1—C6—C7—O1170.83 (18)N2—C19—C20—C21−169 (100)
C5—C6—C7—C8176.98 (18)O3—C15—N1—C12−178.55 (18)
C1—C6—C7—C8−4.8 (3)N2—C15—N1—C120.87 (19)
O1—C7—C8—C115.9 (3)O3—C15—N1—C166.1 (3)
C6—C7—C8—C11−178.50 (16)N2—C15—N1—C16−174.45 (15)
O1—C7—C8—C9−170.35 (17)C13—C12—N1—C15178.39 (17)
C6—C7—C8—C95.3 (2)C11—C12—N1—C15−0.67 (19)
C11—C8—C9—C14−2.3 (2)C13—C12—N1—C16−6.5 (3)
C7—C8—C9—C14174.22 (16)C11—C12—N1—C16174.46 (16)
C11—C8—C9—C10177.82 (15)C17—C16—N1—C15−103.4 (2)
C7—C8—C9—C10−5.7 (2)C17—C16—N1—C1282.1 (2)
C2—C1—C10—O2−4.4 (3)O3—C15—N2—C11178.67 (17)
C6—C1—C10—O2173.79 (18)N1—C15—N2—C11−0.75 (19)
C2—C1—C10—C9176.93 (18)O3—C15—N2—C19−7.5 (3)
C6—C1—C10—C9−4.9 (3)N1—C15—N2—C19173.08 (14)
C14—C9—C10—O26.9 (3)C8—C11—N2—C15−178.39 (18)
C8—C9—C10—O2−173.18 (17)C12—C11—N2—C150.35 (18)
C14—C9—C10—C1−174.42 (16)C8—C11—N2—C199.2 (3)
C8—C9—C10—C15.5 (3)C12—C11—N2—C19−172.03 (16)
C9—C8—C11—N2−179.39 (17)C20—C19—N2—C15−105.30 (18)
C7—C8—C11—N24.3 (3)C20—C19—N2—C1166.7 (2)
D—H···AD—HH···AD···AD—H···A
C18—H18···O2i0.932.313.165 (3)152
C21—H21···O1ii0.932.383.275 (3)161
C2—H2···O3iii0.932.623.333 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C18—H18⋯O2i 0.932.313.165 (3)152
C21—H21⋯O1ii 0.932.383.275 (3)161
C2—H2⋯O3iii 0.932.623.333 (3)134

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

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2.  Toward efficient Zn(II)-based artificial nucleases.

Authors:  Elisa Boseggia; Maddalena Gatos; Lorena Lucatello; Fabrizio Mancin; Stefano Moro; Manlio Palumbo; Claudia Sissi; Paolo Tecilla; Umberto Tonellato; Giuseppe Zagotto
Journal:  J Am Chem Soc       Date:  2004-04-14       Impact factor: 15.419

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4.  2-(4-Methyl-phen-yl)-1H-anthraceno[1,2-d]imidazole-6,11-dione: a fluorescent chemosensor.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

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Journal:  Inorg Chem       Date:  2008-12-15       Impact factor: 5.165

6.  1,3-Diallyl-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodi; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

7.  1,3-Dibenzyl-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodi; Frédéric Capet; El Mokhtar Essassi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

8.  Structure validation in chemical crystallography.

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