Literature DB >> 21754544

1,3-Dibenzyl-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Zahra Afrakssou, Youssef Kandri Rodi, Frédéric Capet, El Mokhtar Essassi, Lahcen El Ammari.   

Abstract

The mol-ecule of the title compound, C(29)H(20)N(2)O(3), contains four fused rings, three are six-membered rings and one is the five-membered imidazole ring. The fused-ring system is linked to two benzyl groups. The four fused rings are folded around the O=C⋯C=O direction of the anthraquinone, with a dihedral angle of 16.36 (8)° between the two terminal rings (A and D). The imidazole ring (D) is almost perpendicular to the two benzyl groups (E and F) with dihedral angles of 86.69 (17) and 83.15 (13)°, respectively. In the crystal, adjacent mol-ecules are linked by inter-molecular C-H⋯O hydrogen bonding.

Entities:  

Year:  2011        PMID: 21754544      PMCID: PMC3089129          DOI: 10.1107/S1600536811015078

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmacological activity of anthraquinone, see: Alves et al. (2004 ▶); Gatto et al. (1996 ▶); Krapcho et al. (1991 ▶). For information on its use as a synthetic dye, see: Naeimi & Namdari (2009 ▶). For related structures, see: Afrakssou et al. (2010 ▶); Guimarães et al. (2009 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C29H20N2O3 M = 444.47 Orthorhombic, a = 8.1389 (3) Å b = 12.8748 (4) Å c = 21.5528 (8) Å V = 2258.45 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.49 × 0.18 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.982, T max = 0.987 36228 measured reflections 2629 independent reflections 2137 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.05 2629 reflections 308 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015078/dn2679sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015078/dn2679Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015078/dn2679Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H20N2O3F(000) = 928
Mr = 444.47Dx = 1.307 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2629 reflections
a = 8.1389 (3) Åθ = 2.5–26.4°
b = 12.8748 (4) ŵ = 0.09 mm1
c = 21.5528 (8) ÅT = 296 K
V = 2258.45 (14) Å3Flat, orange
Z = 40.49 × 0.18 × 0.15 mm
Bruker APEXII CCD diffractometer2629 independent reflections
Radiation source: fine-focus sealed tube2137 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 26.4°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.982, Tmax = 0.987k = −15→16
36228 measured reflectionsl = −26→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.0603P)2 + 0.2421P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2629 reflectionsΔρmax = 0.23 e Å3
308 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0123 (15)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0570 (3)0.41604 (19)0.84012 (11)0.0512 (6)
C20.2441 (3)0.53761 (17)0.81399 (10)0.0420 (5)
C30.0919 (3)0.58851 (17)0.82177 (9)0.0375 (5)
C40.0807 (3)0.69572 (17)0.81222 (9)0.0387 (5)
C50.2294 (3)0.74849 (19)0.79858 (10)0.0439 (5)
C60.3764 (3)0.6961 (2)0.79119 (12)0.0508 (6)
H60.47110.73330.78180.061*
C70.3851 (3)0.5888 (2)0.79761 (11)0.0503 (6)
H70.48290.55320.79100.060*
C8−0.0748 (3)0.75336 (18)0.80889 (10)0.0425 (5)
C9−0.0669 (3)0.86723 (18)0.81962 (10)0.0471 (6)
C100.0803 (3)0.92029 (19)0.81274 (10)0.0507 (6)
C110.2320 (4)0.8639 (2)0.79481 (12)0.0546 (6)
C120.0849 (5)1.0278 (2)0.82132 (12)0.0674 (8)
H120.18261.06420.81580.081*
C13−0.0569 (5)1.0794 (2)0.83799 (13)0.0758 (9)
H13−0.05381.15070.84490.091*
C14−0.2029 (5)1.0266 (2)0.84455 (13)0.0730 (9)
H14−0.29751.06240.85580.088*
C15−0.2100 (4)0.9207 (2)0.83451 (13)0.0606 (7)
H15−0.30950.88550.83770.073*
C16−0.1814 (3)0.5233 (2)0.86850 (12)0.0506 (6)
H16A−0.23100.45520.87280.061*
H16B−0.25300.56510.84260.061*
C17−0.1677 (3)0.5729 (2)0.93142 (12)0.0590 (7)
C18−0.0688 (5)0.5290 (4)0.97586 (16)0.1043 (13)
H18−0.00910.46940.96670.125*
C19−0.0579 (8)0.5726 (6)1.0333 (2)0.155 (2)
H190.00950.54251.06310.186*
C20−0.1443 (10)0.6593 (6)1.0473 (2)0.164 (3)
H20−0.13520.68881.08660.197*
C21−0.2439 (9)0.7032 (4)1.0045 (3)0.152 (3)
H21−0.30420.76241.01400.183*
C22−0.2544 (6)0.6587 (3)0.94659 (17)0.1007 (13)
H22−0.32300.68860.91710.121*
C230.3437 (3)0.3524 (2)0.82695 (13)0.0583 (7)
H23A0.42410.36520.79460.070*
H23B0.29250.28590.81840.070*
C240.4309 (3)0.34610 (19)0.88834 (12)0.0522 (6)
C250.5405 (5)0.2681 (3)0.8964 (2)0.1062 (14)
H250.55820.22070.86450.127*
C260.6266 (7)0.2583 (5)0.9517 (3)0.143 (2)
H260.70190.20450.95630.172*
C270.6028 (6)0.3250 (4)0.9984 (2)0.1106 (15)
H270.65770.31621.03590.133*
C280.4987 (5)0.4050 (3)0.99050 (14)0.0869 (10)
H280.48560.45361.02210.104*
C290.4106 (4)0.4159 (2)0.93574 (13)0.0680 (8)
H290.33740.47090.93120.082*
N1−0.0211 (2)0.51260 (15)0.83808 (8)0.0440 (5)
N20.2183 (2)0.43334 (15)0.82446 (9)0.0484 (5)
O1−0.0047 (3)0.33329 (14)0.85284 (11)0.0743 (6)
O20.3554 (3)0.91046 (17)0.77953 (12)0.0851 (7)
O3−0.2048 (2)0.71168 (14)0.79558 (9)0.0562 (5)
U11U22U33U12U13U23
C10.0601 (15)0.0381 (13)0.0553 (13)0.0009 (12)−0.0041 (12)−0.0057 (10)
C20.0419 (12)0.0429 (12)0.0412 (11)0.0069 (10)−0.0025 (10)−0.0031 (9)
C30.0349 (11)0.0410 (11)0.0366 (10)0.0006 (10)−0.0014 (9)−0.0027 (9)
C40.0382 (11)0.0420 (12)0.0358 (10)0.0022 (10)−0.0006 (9)−0.0008 (9)
C50.0424 (13)0.0459 (13)0.0433 (12)−0.0039 (11)0.0011 (10)0.0043 (10)
C60.0374 (12)0.0613 (16)0.0539 (13)−0.0058 (12)0.0048 (11)0.0031 (12)
C70.0348 (12)0.0621 (15)0.0540 (13)0.0065 (12)0.0018 (10)−0.0024 (12)
C80.0421 (12)0.0444 (12)0.0410 (11)0.0045 (11)−0.0014 (10)0.0026 (9)
C90.0588 (14)0.0397 (12)0.0427 (12)0.0091 (12)−0.0023 (12)0.0030 (9)
C100.0676 (16)0.0409 (12)0.0437 (12)0.0020 (13)−0.0013 (12)0.0066 (10)
C110.0595 (16)0.0503 (14)0.0541 (14)−0.0097 (13)0.0074 (12)0.0093 (12)
C120.103 (2)0.0414 (14)0.0578 (15)−0.0049 (17)−0.0003 (17)0.0088 (12)
C130.130 (3)0.0387 (13)0.0591 (16)0.016 (2)0.0005 (19)0.0022 (12)
C140.101 (3)0.0517 (16)0.0663 (17)0.0253 (18)0.0034 (17)−0.0017 (13)
C150.0702 (17)0.0507 (14)0.0608 (15)0.0181 (14)0.0031 (14)0.0013 (12)
C160.0371 (12)0.0480 (13)0.0666 (14)−0.0062 (11)0.0028 (11)0.0018 (11)
C170.0514 (14)0.0671 (16)0.0586 (14)−0.0085 (15)0.0149 (12)0.0018 (13)
C180.096 (3)0.151 (4)0.0661 (19)0.017 (3)−0.009 (2)−0.003 (2)
C190.145 (5)0.254 (8)0.064 (2)0.017 (6)−0.012 (3)−0.020 (3)
C200.203 (7)0.214 (7)0.076 (3)−0.038 (6)0.041 (4)−0.055 (4)
C210.209 (7)0.148 (5)0.100 (3)0.019 (5)0.060 (4)−0.043 (4)
C220.124 (3)0.094 (3)0.084 (2)0.021 (3)0.032 (2)−0.010 (2)
C230.0621 (16)0.0460 (13)0.0666 (16)0.0194 (13)−0.0007 (14)−0.0110 (12)
C240.0457 (13)0.0493 (13)0.0615 (14)0.0066 (12)0.0049 (12)0.0079 (11)
C250.119 (3)0.093 (3)0.106 (3)0.061 (3)−0.024 (3)−0.004 (2)
C260.148 (4)0.148 (4)0.133 (4)0.082 (4)−0.040 (4)0.016 (4)
C270.092 (3)0.152 (4)0.087 (3)0.008 (3)−0.027 (2)0.044 (3)
C280.093 (2)0.111 (3)0.0569 (17)−0.014 (2)−0.0090 (17)0.0104 (17)
C290.0717 (19)0.0707 (17)0.0618 (16)0.0085 (17)−0.0029 (14)0.0048 (14)
N10.0427 (11)0.0397 (10)0.0497 (10)−0.0022 (9)0.0009 (9)−0.0037 (8)
N20.0468 (11)0.0403 (11)0.0582 (11)0.0097 (9)−0.0025 (10)−0.0058 (9)
O10.0786 (14)0.0369 (9)0.1073 (17)−0.0058 (10)0.0062 (12)−0.0017 (9)
O20.0745 (14)0.0620 (12)0.1188 (18)−0.0200 (12)0.0288 (14)0.0139 (12)
O30.0412 (9)0.0526 (10)0.0749 (12)0.0058 (8)−0.0080 (8)0.0012 (9)
C1—O11.209 (3)C16—C171.503 (4)
C1—N21.374 (3)C16—H16A0.9700
C1—N11.397 (3)C16—H16B0.9700
C2—C71.370 (3)C17—C221.351 (5)
C2—N21.377 (3)C17—C181.373 (5)
C2—C31.412 (3)C18—C191.362 (6)
C3—N11.387 (3)C18—H180.9300
C3—C41.398 (3)C19—C201.353 (9)
C4—C51.418 (3)C19—H190.9300
C4—C81.469 (3)C20—C211.353 (9)
C5—C61.383 (3)C20—H200.9300
C5—C111.488 (4)C21—C221.375 (7)
C6—C71.390 (4)C21—H210.9300
C6—H60.9300C22—H220.9300
C7—H70.9300C23—N21.460 (3)
C8—O31.220 (3)C23—C241.504 (4)
C8—C91.486 (3)C23—H23A0.9700
C9—C101.387 (4)C23—H23B0.9700
C9—C151.391 (4)C24—C251.354 (4)
C10—C121.396 (4)C24—C291.371 (4)
C10—C111.483 (4)C25—C261.389 (6)
C11—O21.215 (3)C25—H250.9300
C12—C131.380 (5)C26—C271.338 (6)
C12—H120.9300C26—H260.9300
C13—C141.376 (5)C27—C281.344 (5)
C13—H130.9300C27—H270.9300
C14—C151.382 (4)C28—C291.388 (4)
C14—H140.9300C28—H280.9300
C15—H150.9300C29—H290.9300
C16—N11.467 (3)
O1—C1—N2126.5 (2)H16A—C16—H16B107.9
O1—C1—N1127.0 (2)C22—C17—C18118.3 (3)
N2—C1—N1106.4 (2)C22—C17—C16121.8 (3)
C7—C2—N2129.7 (2)C18—C17—C16119.9 (3)
C7—C2—C3122.8 (2)C19—C18—C17120.2 (5)
N2—C2—C3107.4 (2)C19—C18—H18119.9
N1—C3—C4133.6 (2)C17—C18—H18119.9
N1—C3—C2106.54 (18)C20—C19—C18120.6 (5)
C4—C3—C2119.8 (2)C20—C19—H19119.7
C3—C4—C5116.6 (2)C18—C19—H19119.7
C3—C4—C8124.2 (2)C21—C20—C19120.2 (5)
C5—C4—C8118.87 (18)C21—C20—H20119.9
C6—C5—C4121.9 (2)C19—C20—H20119.9
C6—C5—C11117.9 (2)C20—C21—C22118.9 (6)
C4—C5—C11120.1 (2)C20—C21—H21120.6
C5—C6—C7121.2 (2)C22—C21—H21120.6
C5—C6—H6119.4C17—C22—C21121.8 (5)
C7—C6—H6119.4C17—C22—H22119.1
C2—C7—C6117.5 (2)C21—C22—H22119.1
C2—C7—H7121.3N2—C23—C24113.6 (2)
C6—C7—H7121.3N2—C23—H23A108.8
O3—C8—C4122.4 (2)C24—C23—H23A108.8
O3—C8—C9120.5 (2)N2—C23—H23B108.8
C4—C8—C9117.0 (2)C24—C23—H23B108.8
C10—C9—C15120.3 (2)H23A—C23—H23B107.7
C10—C9—C8120.5 (2)C25—C24—C29118.0 (3)
C15—C9—C8119.2 (2)C25—C24—C23117.6 (3)
C9—C10—C12119.8 (3)C29—C24—C23124.3 (2)
C9—C10—C11120.4 (2)C24—C25—C26120.7 (4)
C12—C10—C11119.8 (3)C24—C25—H25119.7
O2—C11—C10121.1 (2)C26—C25—H25119.7
O2—C11—C5121.3 (3)C27—C26—C25120.9 (4)
C10—C11—C5117.5 (2)C27—C26—H26119.5
C13—C12—C10119.3 (3)C25—C26—H26119.5
C13—C12—H12120.4C26—C27—C28119.2 (4)
C10—C12—H12120.4C26—C27—H27120.4
C14—C13—C12120.8 (3)C28—C27—H27120.4
C14—C13—H13119.6C27—C28—C29120.7 (4)
C12—C13—H13119.6C27—C28—H28119.6
C13—C14—C15120.5 (3)C29—C28—H28119.6
C13—C14—H14119.8C24—C29—C28120.3 (3)
C15—C14—H14119.8C24—C29—H29119.8
C14—C15—C9119.3 (3)C28—C29—H29119.8
C14—C15—H15120.4C3—N1—C1109.50 (19)
C9—C15—H15120.4C3—N1—C16129.55 (19)
N1—C16—C17112.2 (2)C1—N1—C16118.3 (2)
N1—C16—H16A109.2C1—N2—C2110.11 (19)
C17—C16—H16A109.2C1—N2—C23122.9 (2)
N1—C16—H16B109.2C2—N2—C23126.6 (2)
C17—C16—H16B109.2
D—H···AD—HH···AD···AD—H···A
C13—H13···O1i0.932.393.312 (3)171.
C23—H23A···O2ii0.972.473.439 (4)174.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯O1i0.932.393.312 (3)171
C23—H23A⋯O2ii0.972.473.439 (4)174

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Peptidyl anthraquinones as potential antineoplastic drugs: synthesis, DNA binding, redox cycling, and biological activity.

Authors:  B Gatto; G Zagotto; C Sissi; C Cera; E Uriarte; G Palù; G Capranico; M Palumbo
Journal:  J Med Chem       Date:  1996-08-02       Impact factor: 7.446

3.  Membrane-related effects underlying the biological activity of the anthraquinones emodin and barbaloin.

Authors:  Daiane S Alves; Laura Pérez-Fons; Amparo Estepa; Vicente Micol
Journal:  Biochem Pharmacol       Date:  2004-08-01       Impact factor: 5.858

4.  2-(4-Methyl-phen-yl)-1H-anthraceno[1,2-d]imidazole-6,11-dione: a fluorescent chemosensor.

Authors:  Tiago T Guimarães; Eufrânio N Da Silva Júnior; Carlos Eduardo M Carvalho; Carlos A De Simone; Antonio V Pinto
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

5.  Synthesis and antitumor evaluations of symmetrically and unsymmetrically substituted 1,4-bis[(aminoalkyl)amino]anthracene-9,10-diones and 1,4-bis[(aminoalkyl)amino]-5,8-dihydroxyanthracene-9,10-diones.

Authors:  A P Krapcho; Z Getahun; K L Avery; K J Vargas; M P Hacker; S Spinelli; G Pezzoni; C Manzotti
Journal:  J Med Chem       Date:  1991-08       Impact factor: 7.446

6.  1,3-Diallyl-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodi; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  6 in total
  3 in total

1.  1,3-Bis(prop-2-yn-1-yl)-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Amal Haoudi; Frédéric Capet; Ahmed Mazzah; Christian Rolando; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22

2.  1,3-Bis[3-(1,3-dioxoisoindolin-2-yl)prop-yl]-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodi; Frédéric Capet; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

3.  1,3-Bis(naphthalen-2-ylmeth-yl)-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodi; Frédéric Capet; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  3 in total

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