Literature DB >> 23795103

(1R,2S,4S,4aS,8S,8aS)-4-Hy-droxy-8,8a-dimethyl-10-oxo-2,3,4,7,8,8a-hexa-hydro-1H-4a,1-(ep-oxy-methano)-naphthalen-2-yl acetate.

Ouassila Selaïmia-Ferdjani1, Chahra Bidjou-Haiour, Aurelien Planchat, Muriel Pipelier.   

Abstract

The title compound, C15H20O5, presents a bis-norsesquiterpene skeleton, with a trans-deca-line backbone constrained by the lactone bridge. The α-hy-droxy substituent and the methyl group belonging to the two deca-line rings are in axial positions, whereas the other methyl group and the acyl group occupy the sterically preferred equatorial positions. The mol-ecular structure is stabilized by an intra-molecular C-H⋯O hydrogen bond. In the crystal, mol-ecules are linked into chains along [010] by O-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 23795103      PMCID: PMC3685084          DOI: 10.1107/S1600536813013524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Selaimia-Ferdjani et al. (2013 ▶). For the biological activity of the natural lactone Paralemnolide A analogue of the title compound, see: Wang et al. (2012 ▶) and of related nardosinane sesquiterpene derivatives, see: Bishara et al. (2008 ▶); Huang et al. (2011 ▶); Petit et al. (2004 ▶); Lu et al. (2011 ▶). For related nardosinane sesquiterpenes whose biological activity has not been investigated, see: El-Gamal et al. (2005 ▶); Huang et al. (2006 ▶); Wang & Duh (2007 ▶); Wang et al. (2010 ▶).

Experimental

Crystal data

C15H20O5 M = 280.3 Monoclinic, a = 10.3312 (10) Å b = 7.1692 (8) Å c = 10.8502 (6) Å β = 115.958 (5)° V = 722.56 (12) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.48 × 0.42 × 0.30 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: gaussian (JANA2006; Petříček et al., 2006) ▶ T min = 0.967, T max = 0.972 12282 measured reflections 3328 independent reflections 2774 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.138 S = 1.84 3328 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.12 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: EVALCCD (Duisenberg et al., 2003 ▶); data reduction: COLLECT (Nonius, 1998 ▶); program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006) ▶; molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: JANA2006 ▶. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813013524/bt6907sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013524/bt6907Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H20O5Z = 2
Mr = 280.3F(000) = 300
Monoclinic, P21Dx = 1.288 Mg m3
Hall symbol: P 2ybMo Kα radiation, λ = 0.71069 Å
a = 10.3312 (10) ŵ = 0.10 mm1
b = 7.1692 (8) ÅT = 293 K
c = 10.8502 (6) ÅBlock, colourless
β = 115.958 (5)°0.48 × 0.42 × 0.30 mm
V = 722.56 (12) Å3
Nonius KappaCCD diffractometer3328 independent reflections
Radiation source: X-ray tube2774 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
CCD, φ and ω frames scansθmax = 28.1°, θmin = 6.5°
Absorption correction: gaussian (JANA2006; Petříček et al., 2006)h = −13→13
Tmin = 0.967, Tmax = 0.972k = −9→9
12282 measured reflectionsl = −14→14
Refinement on F277 constraints
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.138Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0025000002I2)
S = 1.84(Δ/σ)max = 0.013
3328 reflectionsΔρmax = 0.15 e Å3
185 parametersΔρmin = −0.12 e Å3
0 restraints
xyzUiso*/Ueq
O4a−0.24245 (17)−0.3248 (2)−0.96277 (13)0.0469 (6)
O20.13229 (15)−0.5347 (2)−0.74186 (16)0.0540 (6)
O9−0.1870 (2)−0.6248 (2)−0.95660 (17)0.0580 (7)
O4−0.0236 (2)0.0757 (2)−0.7741 (2)0.0747 (9)
O120.3391 (2)−0.4418 (4)−0.5763 (2)0.0969 (10)
C1−0.0910 (2)−0.4390 (3)−0.74640 (18)0.0373 (6)
C20.0592 (2)−0.3717 (3)−0.7223 (2)0.0452 (8)
C30.0495 (3)−0.2237 (3)−0.8268 (3)0.0614 (11)
C4−0.0719 (3)−0.0820 (3)−0.8628 (3)0.0554 (10)
C5−0.3316 (3)−0.0382 (3)−0.9057 (3)0.0649 (10)
C6−0.4264 (3)−0.0442 (5)−0.8551 (3)0.0789 (12)
C7−0.4257 (3)−0.1856 (5)−0.7544 (3)0.0787 (13)
C8−0.3245 (2)−0.3495 (4)−0.7387 (2)0.0565 (9)
C9−0.1760 (2)−0.4802 (3)−0.8969 (2)0.0409 (7)
C10−0.0991 (3)−0.1656 (4)−0.5957 (2)0.0558 (9)
C11−0.3100 (3)−0.4779 (6)−0.6212 (3)0.0855 (15)
C120.2732 (2)−0.5534 (3)−0.6613 (2)0.0504 (8)
C130.3297 (3)−0.7288 (4)−0.6924 (3)0.0661 (11)
C8a−0.1778 (2)−0.2776 (3)−0.72788 (18)0.0400 (7)
C4a−0.2064 (2)−0.1689 (3)−0.8603 (2)0.0446 (7)
H1c5−0.3433450.053419−0.974280.0778*
H1c6−0.5007690.048719−0.8851260.0947*
H1c7−0.521658−0.231528−0.7819060.0945*
H2c7−0.398331−0.127184−0.6669530.0945*
H1c8−0.365931−0.42545−0.8196370.0678*
H1c11−0.262203−0.590901−0.6254420.1026*
H2c11−0.254686−0.416546−0.5353490.1026*
H3c11−0.403884−0.507108−0.6288330.1026*
H1c10−0.162091−0.070956−0.5900840.0669*
H2c10−0.070651−0.247485−0.5181770.0669*
H3c10−0.015259−0.108038−0.5957740.0669*
H1c1−0.078238−0.541924−0.685550.0448*
H1c20.108852−0.317946−0.6326280.0543*
H1c130.266544−0.830237−0.6983420.0793*
H2c130.335007−0.715916−0.7781330.0793*
H3c130.42399−0.753581−0.6208270.0793*
H1c30.041767−0.283227−0.9089810.0736*
H2c30.139807−0.159392−0.7954060.0736*
H1c4−0.099131−0.040857−0.9550870.0665*
H1−0.056 (5)0.173 (7)−0.818 (4)0.107 (13)*
U11U22U33U12U13U23
O4a0.0587 (9)0.0363 (7)0.0343 (7)−0.0011 (7)0.0100 (6)−0.0009 (5)
O20.0389 (8)0.0493 (8)0.0649 (9)0.0047 (7)0.0145 (7)−0.0114 (8)
O90.0699 (11)0.0392 (7)0.0577 (9)−0.0061 (8)0.0212 (8)−0.0126 (7)
O40.0777 (13)0.0319 (8)0.0961 (15)−0.0112 (8)0.0212 (11)−0.0057 (9)
O120.0516 (11)0.1034 (17)0.1043 (16)0.0019 (11)0.0053 (10)−0.0446 (15)
C10.0363 (9)0.0341 (8)0.0368 (9)−0.0012 (8)0.0116 (7)0.0027 (8)
C20.0379 (10)0.0385 (9)0.0574 (12)−0.0036 (8)0.0191 (9)−0.0110 (9)
C30.0679 (15)0.0409 (10)0.0914 (18)−0.0106 (11)0.0498 (14)−0.0025 (12)
C40.0704 (16)0.0313 (10)0.0618 (14)−0.0047 (10)0.0264 (12)0.0031 (9)
C50.0615 (15)0.0462 (11)0.0603 (14)0.0115 (12)0.0022 (12)0.0025 (11)
C60.0530 (15)0.0752 (17)0.0814 (18)0.0256 (15)0.0043 (13)−0.0116 (16)
C70.0430 (13)0.105 (2)0.0816 (18)0.0144 (15)0.0214 (12)−0.0156 (17)
C80.0391 (11)0.0744 (15)0.0528 (12)−0.0025 (11)0.0171 (9)−0.0064 (12)
C90.0448 (10)0.0342 (9)0.0414 (9)−0.0066 (8)0.0168 (8)−0.0016 (8)
C100.0477 (12)0.0648 (14)0.0440 (11)0.0048 (11)0.0100 (9)−0.0161 (11)
C110.0634 (18)0.123 (3)0.0822 (18)−0.0143 (19)0.0428 (15)0.011 (2)
C120.0388 (10)0.0562 (12)0.0541 (12)0.0009 (10)0.0183 (9)0.0023 (11)
C130.0491 (13)0.0702 (15)0.0796 (16)0.0127 (12)0.0289 (12)0.0025 (14)
C8a0.0353 (9)0.0430 (9)0.0351 (9)0.0008 (8)0.0091 (7)−0.0031 (8)
C4a0.0498 (11)0.0325 (8)0.0406 (10)0.0004 (8)0.0097 (8)−0.0019 (8)
O4a—C91.340 (2)C5—H1c50.96
O4a—C4a1.504 (2)C6—C71.488 (5)
O2—C21.456 (3)C6—H1c60.96
O2—C121.337 (2)C7—C81.532 (4)
O9—C91.201 (3)C7—H1c70.96
O4—C41.426 (3)C7—H2c70.96
O4—H10.83 (5)C8—C111.526 (5)
O12—C121.185 (3)C8—C8a1.556 (3)
C1—C21.535 (3)C8—H1c80.96
C1—C91.507 (3)C10—C8a1.531 (3)
C1—C8a1.530 (3)C10—H1c100.96
C1—H1c10.96C10—H2c100.96
C2—C31.524 (4)C10—H3c100.96
C2—H1c20.96C11—H1c110.96
C3—C41.526 (4)C11—H2c110.96
C3—H1c30.96C11—H3c110.96
C3—H2c30.96C12—C131.486 (4)
C4—C4a1.534 (4)C13—H1c130.96
C4—H1c40.96C13—H2c130.96
C5—C61.316 (5)C13—H3c130.96
C5—C4a1.495 (3)C8a—C4a1.545 (3)
C9—O4a—C4a108.72 (13)C7—C8—H1c8108.87
C2—O2—C12118.11 (17)C11—C8—C8a113.63 (18)
C4—O4—H1111 (3)C11—C8—H1c8105.3
C2—C1—C9108.2 (2)C8a—C8—H1c8106.65
C2—C1—C8a110.30 (16)O4a—C9—O9121.67 (17)
C2—C1—H1c1107.44O4a—C9—C1109.53 (16)
C9—C1—C8a101.19 (14)O9—C9—C1128.80 (17)
C9—C1—H1c1115.73C8a—C10—H1c10109.47
C8a—C1—H1c1113.8C8a—C10—H2c10109.47
O2—C2—C1105.87 (16)C8a—C10—H3c10109.47
O2—C2—C3108.7 (2)H1c10—C10—H2c10109.47
O2—C2—H1c2112.88H1c10—C10—H3c10109.47
C1—C2—C3111.08 (17)H2c10—C10—H3c10109.47
C1—C2—H1c2110.54C8—C11—H1c11109.47
C3—C2—H1c2107.84C8—C11—H2c11109.47
C2—C3—C4115.7 (3)C8—C11—H3c11109.47
C2—C3—H1c3109.47H1c11—C11—H2c11109.47
C2—C3—H2c3109.47H1c11—C11—H3c11109.47
C4—C3—H1c3109.47H2c11—C11—H3c11109.47
C4—C3—H2c3109.47O2—C12—O12122.1 (2)
H1c3—C3—H2c3102.43O2—C12—C13111.11 (19)
O4—C4—C3110.43 (19)O12—C12—C13126.8 (2)
O4—C4—C4a111.3 (3)C12—C13—H1c13109.47
O4—C4—H1c4108.45C12—C13—H2c13109.47
C3—C4—C4a111.97 (19)C12—C13—H3c13109.47
C3—C4—H1c4107.71H1c13—C13—H2c13109.47
C4a—C4—H1c4106.8H1c13—C13—H3c13109.47
C6—C5—C4a122.5 (3)H2c13—C13—H3c13109.47
C6—C5—H1c5118.76C1—C8a—C8110.28 (18)
C4a—C5—H1c5118.76C1—C8a—C10114.76 (15)
C5—C6—C7124.3 (3)C1—C8a—C4a98.29 (18)
C5—C6—H1c6117.87C8—C8a—C10110.2 (2)
C7—C6—H1c6117.87C8—C8a—C4a108.26 (15)
C6—C7—C8112.8 (3)C10—C8a—C4a114.46 (17)
C6—C7—H1c7109.47O4a—C4a—C4102.8 (2)
C6—C7—H2c7109.47O4a—C4a—C5108.89 (15)
C8—C7—H1c7109.47O4a—C4a—C8a101.37 (14)
C8—C7—H2c7109.47C4—C4a—C5113.57 (19)
H1c7—C7—H2c7105.88C4—C4a—C8a114.52 (16)
C7—C8—C11111.6 (3)C5—C4a—C8a114.1 (2)
C7—C8—C8a110.4 (2)
D—H···AD—HH···AD···AD—H···A
C8—H1c8···C90.962.482.913 (4)107.28
C10—H3c10···O40.962.312.946 (4)122.91
C2—H1c2···O120.962.362.668 (3)98.20
O4—H1···O9i0.83 (5)2.10 (4)2.907 (2)165 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H3c10⋯O40.962.312.946 (4)122.91
O4—H1⋯O9i 0.83 (5)2.10 (4)2.907 (2)165 (4)

Symmetry code: (i) .

  7 in total

1.  Sesquiterpenoids and norsesquiterpenoids from the Formosan soft coral Lemnalia laevis.

Authors:  Ali A H El-Gamal; E-Ping Chiu; Chia-Hua Li; Shi-Yie Cheng; Chang-Feng Dai; Chang-Yih Duh
Journal:  J Nat Prod       Date:  2005-12       Impact factor: 4.050

2.  Nardosinane sesquiterpenoids from the Formosan soft coral Lemnalia flava.

Authors:  Yi Lu; Po-Ju Li; Wen-Yu Hung; Jui-Hsin Su; Zhi-Hong Wen; Chi-Hsin Hsu; Chang-Feng Dai; Michael Y Chiang; Jyh-Horng Sheu
Journal:  J Nat Prod       Date:  2011-01-04       Impact factor: 4.050

3.  Nardosinane sesquiterpenoids from the formosan soft coral Nephthea elongata.

Authors:  Shang-Kwei Wang; Chang-Yih Duh
Journal:  Chem Pharm Bull (Tokyo)       Date:  2007-05       Impact factor: 1.645

4.  Paralemnolins J-P, new sesquiterpenoids from the soft coral Paralemnalia thyrsoide.

Authors:  Guey-Horng Wang; Ho-Cheng Huang; Jui-Hsin Su; Yang-Chang Wu; Jyh-Horng Sheu
Journal:  Chem Pharm Bull (Tokyo)       Date:  2010-01       Impact factor: 1.645

5.  Nardosinanols A-I and lemnafricanol, sesquiterpenes from several soft corals, Lemnalia sp., Paralemnalia clavata, Lemnalia africana, and Rhytisma fulvum fulvum.

Authors:  Ashgan Bishara; Dina Yeffet; Mor Sisso; Guy Shmul; Michael Schleyer; Yehuda Benayahu; Amira Rudi; Yoel Kashman
Journal:  J Nat Prod       Date:  2008-02-05       Impact factor: 4.050

6.  nardosinane-type sesquiterpenoids from the formosan soft coral Paralemnalia thyrsoides.

Authors:  Chiung-Yao Huang; Jui-Hsin Su; Bo-Wei Chen; Zhi-Hong Wen; Chi-Hsin Hsu; Chang-Feng Dai; Jyh-Horng Sheu; Ping-Jyun Sung
Journal:  Mar Drugs       Date:  2011-09-16       Impact factor: 6.085

7.  Paralemnolide A, an unprecedented bisnorsesquiterpene from the Taiwanese soft coral Paralemnalia thyrsoides.

Authors:  Shang-Kwei Wang; Yu-Sheng Lee; Chang-Yih Duh
Journal:  Mar Drugs       Date:  2012-07-17       Impact factor: 6.085

  7 in total

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