Literature DB >> 23795086

Thio-phene-2-carbaldehyde azine.

David K Geiger1, H Cristina Geiger, Laura M Szczesniak.   

Abstract

The asymmetric unit of the title compound, C10H8N2S2, is composed of two independent half-mol-ecules, each residing on a center of symmetry. In the crystal, weak C-H⋯π inter-actions join the two symmetry-independent molecules together into interlinked chains parallel to [011]. The crystal structure was refined as a two-component pseudo-merohedral twin using the twin law 001 0-10 100. The refined domain fractions are 0.516 (3) and 0.484 (3).

Entities:  

Year:  2013        PMID: 23795086      PMCID: PMC3685067          DOI: 10.1107/S1600536813013275

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of pyridine-4-carbaldehyde, see: Shanmuga Sundara Raj et al. (2000 ▶) and for the structure of (E)-1-di­phenyl­methyl­idene-2-[(1H-indol-3-yl)methyl­idene]hydrazine, see: Archana et al. (2010 ▶).

Experimental

Crystal data

C10H8N2S2 M = 220.30 Monoclinic, a = 9.681 (2) Å b = 11.399 (3) Å c = 9.694 (2) Å β = 100.850 (9)° V = 1050.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.47 mm−1 T = 200 K 0.50 × 0.20 × 0.20 mm

Data collection

Bruker SMART X2S CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2010 ▶) T min = 0.69, T max = 0.91 7000 measured reflections 1890 independent reflections 1349 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.156 S = 0.99 1890 reflections 128 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813013275/zp2003sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013275/zp2003Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013275/zp2003Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013275/zp2003Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2S2Dx = 1.393 Mg m3
Mr = 220.30Melting point: 420 K
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.681 (2) ÅCell parameters from 1222 reflections
b = 11.399 (3) Åθ = 2.8–21.5°
c = 9.694 (2) ŵ = 0.47 mm1
β = 100.850 (9)°T = 200 K
V = 1050.6 (5) Å3Prism, yellow
Z = 40.50 × 0.20 × 0.20 mm
F(000) = 456
Bruker SMART X2S CCD diffractometer1890 independent reflections
Radiation source: XOS X-beam microfocus source1349 reflections with I > 2σ(I)
Doubly curved silicon crystal monochromatorRint = 0.073
Detector resolution: 8.3330 pixels mm-1θmax = 25.4°, θmin = 1.8°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2010)k = −12→13
Tmin = 0.69, Tmax = 0.91l = −11→11
7000 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0825P)2] where P = (Fo2 + 2Fc2)/3
1890 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.15035 (15)0.24362 (18)−0.24483 (16)0.0462 (4)
S2−0.25404 (15)0.26513 (11)0.35231 (15)0.0486 (5)
N1−0.0295 (4)0.0438 (3)−0.0474 (4)0.0442 (12)
N2−0.0495 (4)0.4567 (3)0.4718 (4)0.0446 (13)
C1−0.0425 (5)0.1418 (4)0.0133 (5)0.0432 (14)
H1−0.01530.1470.11250.052*
C2−0.0969 (5)0.2439 (3)−0.0643 (6)0.0361 (13)
C3−0.1093 (6)0.3536 (4)−0.0119 (6)0.0484 (14)
H3−0.0840.37260.0850.058*
C4−0.1644 (5)0.4370 (4)−0.1182 (6)0.0540 (15)
H4−0.18150.5171−0.10020.065*
C5−0.1889 (6)0.3885 (4)−0.2458 (6)0.0519 (15)
H5−0.22440.4312−0.32910.062*
C60.0080 (5)0.3572 (4)0.4585 (5)0.0395 (13)
H60.10730.350.48430.047*
C7−0.0737 (5)0.2566 (4)0.4056 (5)0.0340 (13)
C8−0.0274 (6)0.1447 (4)0.3957 (6)0.0505 (15)
H80.06830.1220.42250.061*
C9−0.1364 (6)0.0664 (4)0.3416 (5)0.0572 (16)
H9−0.1225−0.01470.32650.069*
C10−0.2655 (6)0.1210 (4)0.3131 (6)0.0570 (16)
H10−0.35110.0820.27570.068*
U11U22U33U12U13U23
S10.0523 (12)0.0503 (7)0.0336 (10)−0.0004 (5)0.0017 (7)0.0045 (5)
S20.0389 (11)0.0509 (7)0.0543 (13)−0.0039 (6)0.0041 (7)0.0047 (6)
N10.048 (3)0.039 (2)0.043 (3)−0.0068 (19)0.002 (2)0.0083 (19)
N20.040 (3)0.040 (2)0.053 (3)−0.0068 (17)0.009 (2)0.0027 (19)
C10.055 (4)0.039 (2)0.037 (3)−0.008 (2)0.015 (3)0.003 (2)
C20.028 (3)0.044 (2)0.037 (3)−0.0046 (19)0.007 (2)0.004 (2)
C30.055 (4)0.045 (2)0.047 (3)0.000 (3)0.017 (3)0.001 (3)
C40.047 (4)0.041 (3)0.075 (4)−0.001 (2)0.016 (3)0.002 (3)
C50.041 (3)0.053 (3)0.061 (4)0.004 (2)0.007 (3)0.015 (3)
C60.037 (3)0.042 (3)0.041 (3)0.001 (2)0.010 (2)0.001 (2)
C70.030 (3)0.041 (2)0.032 (3)0.0031 (19)0.010 (2)0.005 (2)
C80.045 (3)0.046 (3)0.065 (4)0.002 (2)0.022 (3)−0.002 (3)
C90.083 (5)0.040 (3)0.054 (4)−0.004 (3)0.026 (3)−0.004 (2)
C100.071 (4)0.051 (3)0.048 (4)−0.027 (3)0.007 (3)0.000 (3)
S1—C51.693 (5)C3—H30.95
S1—C21.729 (6)C4—C51.335 (7)
S2—C101.685 (5)C4—H40.95
S2—C71.728 (5)C5—H50.95
N1—C11.280 (5)C6—C71.432 (6)
N1—N1i1.402 (7)C6—H60.95
N2—C61.281 (5)C7—C81.361 (6)
N2—N2ii1.412 (7)C8—C91.406 (7)
C1—C21.431 (6)C8—H80.95
C1—H10.95C9—C101.377 (7)
C2—C31.364 (6)C9—H90.95
C3—C41.429 (7)C10—H100.95
C5—S1—C291.6 (3)C4—C5—H5123.3
C10—S2—C791.9 (3)S1—C5—H5123.3
C1—N1—N1i112.6 (5)N2—C6—C7121.6 (5)
C6—N2—N2ii112.5 (5)N2—C6—H6119.2
N1—C1—C2121.8 (5)C7—C6—H6119.2
N1—C1—H1119.1C8—C7—C6127.5 (5)
C2—C1—H1119.1C8—C7—S2111.1 (4)
C3—C2—C1126.8 (5)C6—C7—S2121.4 (3)
C3—C2—S1110.4 (4)C7—C8—C9112.8 (5)
C1—C2—S1122.7 (3)C7—C8—H8123.6
C2—C3—C4112.9 (5)C9—C8—H8123.6
C2—C3—H3123.6C10—C9—C8112.2 (5)
C4—C3—H3123.6C10—C9—H9123.9
C5—C4—C3111.7 (5)C8—C9—H9123.9
C5—C4—H4124.1C9—C10—S2112.1 (4)
C3—C4—H4124.1C9—C10—H10124.0
C4—C5—S1113.5 (4)S2—C10—H10124.0
D—H···AD—HH···AD···AD—H···A
C1—H1···C80.952.773.683 (7)161
C1—H1···C90.952.853.576 (7)134
C8—H8···C4iii0.952.773.663 (7)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯C80.952.773.683 (7)161
C1—H1⋯C90.952.853.576 (7)134
C8—H8⋯C4i 0.952.773.663 (7)156

Symmetry code: (i) .

  4 in total

1.  Pyridine-4-carbaldehyde azine.

Authors:  S Shanmuga Sundara Raj; H K Fun; J Zhang; R G Xiong; X Z You
Journal:  Acta Crystallogr C       Date:  2000-06-01       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-1-Diphenyl-methyl-idene-2-[(1H-indol-3-yl)methyl-idene]hydrazine.

Authors:  R Archana; R Anbazhagan; K R Sankaran; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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