Literature DB >> 23795051

Alternariol 9-O-methyl ether dimethyl sulfoxide monosolvate.

Sreekanth Dasari1, Kristin I Miller, John A Kalaitzis, Mohan Bhadbhade, Brett A Neilan.   

Abstract

THE TITLE COMPOUND (SYSTEMATIC NAME: 3,7-dihy-droxy-9-meth-oxy-1-methyl-6H-benzo[c]chromen-6-one dimethyl sulfoxide monosolvate), C15H12O5·C2H6OS, was isolated from an unidentified endophytic fungus (belonging to class Ascomycetes) of Taxus sp. In the crystal, both the alternariol 9-O-methyl ether (AME) and the dimethyl sulfoxide (DMSO) mol-ecules exhibit crystallographic mirror symmetry. One of the hy-droxy groups makes bifurcated hydrogen bonds, viz. an intra-molecular bond with the carbonyl group and an inter-molecular bond with the carbonyl group in an inversion-related AME mol-ecule. In the crystal, the AME mol-ecules are organized into stacks parallel with the b axis by π-π inter-actions between centrosymmetrically related mol-ecules [the distance between the centroid of the central ring and the centroid of the meth-oxy-substituted benzene ring in the next mol-ecule of the stack is 3.6184 (5) Å]. Pairs of DMSO mol-ecules, linked via centrosymmetric C-H⋯O contacts, are inserted into the voids created by the AME mol-ecules, making O-H⋯O and C-H⋯O contacts with the hosts.

Entities:  

Year:  2013        PMID: 23795051      PMCID: PMC3685032          DOI: 10.1107/S1600536813012294

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of AME and its precursor alternariol, see: Aly et al. (2008 ▶); Brugger et al. (2006 ▶); Pfeiffer et al. (2007 ▶); Miller et al. (2012 ▶). For their occurrence as contaminants in food and beverages, see: Lau et al. (2003 ▶). For the related crystal strucutre of alternariol, see: Dasari et al. (2012 ▶).

Experimental

Crystal data

C15H12O5·C2H6OS M = 350.37 Monoclinic, a = 18.8906 (8) Å b = 6.8391 (3) Å c = 15.3542 (8) Å β = 126.815 (3)° V = 1588.08 (13) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 150 K 0.38 × 0.09 × 0.05 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.916, T max = 0.988 7177 measured reflections 1524 independent reflections 1382 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.093 S = 1.10 1524 reflections 144 parameters 3 restraints H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL-Plus. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813012294/fy2088sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012294/fy2088Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012294/fy2088Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12O5·C2H6OSF(000) = 736
Mr = 350.37Dx = 1.465 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yCell parameters from 4872 reflections
a = 18.8906 (8) Åθ = 2.7–30.6°
b = 6.8391 (3) ŵ = 0.24 mm1
c = 15.3542 (8) ÅT = 150 K
β = 126.815 (3)°Plate, colourless
V = 1588.08 (13) Å30.38 × 0.09 × 0.05 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer1524 independent reflections
Radiation source: fine-focus sealed tube1382 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ scans, and ω scans with κ offsetsθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −21→22
Tmin = 0.916, Tmax = 0.988k = −8→8
7177 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.055P)2 + 0.9734P] where P = (Fo2 + 2Fc2)/3
1524 reflections(Δ/σ)max < 0.001
144 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.39016 (10)0.00000.94667 (11)0.0391 (4)
H1O10.35370.00000.95750.059*
O20.42281 (8)0.00000.67046 (11)0.0206 (3)
O30.45897 (9)0.00000.55957 (11)0.0265 (4)
O40.34069 (9)0.00000.35176 (11)0.0237 (3)
H1O40.39310.00000.41620.036*
O50.04062 (9)0.00000.22240 (11)0.0268 (4)
C10.21796 (12)0.00000.64985 (15)0.0174 (4)
C20.25831 (11)0.00000.76077 (13)0.0205 (4)
H20.22290.00000.78420.025*
C30.34992 (13)0.00000.83847 (15)0.0227 (5)
C40.40259 (13)0.00000.80403 (15)0.0209 (4)
H4C0.46390.00000.85400.025*
C50.36216 (13)0.00000.69341 (16)0.0173 (4)
C60.39827 (13)0.00000.56791 (16)0.0190 (4)
C70.30546 (12)0.00000.47951 (15)0.0172 (4)
C80.28052 (13)0.00000.37232 (16)0.0185 (4)
C90.19222 (13)0.00000.28315 (15)0.0202 (4)
H90.17570.00000.21260.024*
C100.12935 (13)0.00000.30239 (16)0.0192 (4)
C110.15201 (12)0.00000.40773 (13)0.0194 (4)
H110.10770.00000.41700.023*
C120.24039 (13)0.00000.49846 (16)0.0161 (4)
C130.27066 (12)0.00000.61190 (15)0.0162 (4)
C140.11825 (10)0.00000.57677 (11)0.0218 (4)
H14A0.0970−0.11460.53170.033*0.50
H14B0.09700.11460.53170.033*0.50
H14C0.09740.00000.62040.033*
C150.01044 (14)0.00000.11184 (16)0.0292 (5)
H15A−0.05300.00000.06410.044*
H15B0.0320−0.11460.09860.044*0.50
H15C0.03200.11460.09860.044*0.50
S1D0.30260 (3)0.00000.10913 (4)0.02538 (19)
O1D0.27939 (9)0.0000−0.00407 (11)0.0298 (4)
C1D0.37818 (10)0.1967 (2)0.17933 (12)0.0285 (4)
H40.39920.19720.25380.043*
H30.34890.31810.14550.043*
H50.42730.18080.17650.043*
U11U22U33U12U13U23
O10.0209 (8)0.0812 (13)0.0132 (7)0.0000.0091 (7)0.000
O20.0136 (7)0.0319 (7)0.0157 (7)0.0000.0084 (6)0.000
O30.0170 (7)0.0435 (9)0.0217 (8)0.0000.0131 (6)0.000
O40.0209 (7)0.0340 (8)0.0190 (7)0.0000.0134 (6)0.000
O50.0173 (7)0.0422 (9)0.0130 (7)0.0000.0048 (6)0.000
C10.0179 (10)0.0161 (9)0.0162 (9)0.0000.0092 (8)0.000
C20.0195 (10)0.0265 (10)0.0188 (10)0.0000.0132 (9)0.000
C30.0221 (10)0.0303 (11)0.0142 (10)0.0000.0100 (9)0.000
C40.0135 (9)0.0284 (10)0.0151 (10)0.0000.0054 (8)0.000
C50.0166 (9)0.0180 (9)0.0180 (10)0.0000.0108 (8)0.000
C60.0189 (10)0.0190 (9)0.0184 (10)0.0000.0108 (8)0.000
C70.0181 (10)0.0152 (9)0.0176 (10)0.0000.0103 (9)0.000
C80.0236 (10)0.0152 (9)0.0200 (10)0.0000.0150 (9)0.000
C90.0257 (11)0.0198 (9)0.0140 (9)0.0000.0113 (9)0.000
C100.0165 (9)0.0190 (9)0.0157 (10)0.0000.0062 (8)0.000
C110.0164 (10)0.0226 (9)0.0176 (10)0.0000.0094 (9)0.000
C120.0188 (9)0.0118 (8)0.0161 (9)0.0000.0097 (8)0.000
C130.0163 (9)0.0145 (9)0.0165 (10)0.0000.0092 (8)0.000
C140.0174 (10)0.0307 (10)0.0190 (10)0.0000.0119 (9)0.000
C150.0266 (12)0.0389 (12)0.0132 (10)0.0000.0072 (9)0.000
S1D0.0166 (3)0.0424 (3)0.0167 (3)0.0000.0097 (2)0.000
O1D0.0221 (8)0.0481 (9)0.0152 (7)0.0000.0090 (6)0.000
C1D0.0306 (8)0.0267 (8)0.0234 (8)0.0054 (6)0.0136 (7)0.0019 (6)
O1—C31.351 (2)C7—C121.423 (3)
O1—H1O10.8003C8—C91.386 (3)
O2—C61.349 (2)C9—C101.385 (3)
O2—C51.386 (2)C9—H90.9300
O3—C61.228 (2)C10—C111.403 (2)
O4—C81.350 (2)C11—C121.393 (3)
O4—H1O40.8859C11—H110.9300
O5—C101.360 (2)C12—C131.472 (3)
O5—C151.431 (2)C14—H14A0.9600
C1—C21.388 (2)C14—H14B0.9600
C1—C131.423 (3)C14—H14C0.9600
C1—C141.508 (2)C15—H15A0.9600
C2—C31.394 (3)C15—H15B0.9600
C2—H20.9300C15—H15C0.9600
C3—C41.378 (3)S1D—O1D1.5166 (15)
C4—C51.383 (3)S1D—C1D1.7790 (15)
C4—H4C0.9300S1D—C1Di1.7790 (15)
C5—C131.401 (3)C1D—H40.9600
C6—C71.437 (3)C1D—H30.9600
C7—C81.415 (3)C1D—H50.9600
C3—O1—H1O1109.6O5—C10—C11113.60 (17)
C6—O2—C5122.59 (15)C9—C10—C11122.51 (17)
C8—O4—H1O4105.8C12—C11—C10120.51 (16)
C10—O5—C15118.07 (16)C12—C11—H11119.7
C2—C1—C13119.87 (17)C10—C11—H11119.7
C2—C1—C14115.84 (16)C11—C12—C7117.39 (17)
C13—C1—C14124.30 (16)C11—C12—C13124.49 (17)
C1—C2—C3122.50 (18)C7—C12—C13118.13 (17)
C1—C2—H2118.7C5—C13—C1115.19 (17)
C3—C2—H2118.7C5—C13—C12116.97 (17)
O1—C3—C4117.92 (18)C1—C13—C12127.83 (17)
O1—C3—C2123.20 (18)C1—C14—H14A109.5
C4—C3—C2118.88 (18)C1—C14—H14B109.5
C3—C4—C5118.47 (18)H14A—C14—H14B109.5
C3—C4—H4C120.8C1—C14—H14C109.5
C5—C4—H4C120.8H14A—C14—H14C109.5
C4—C5—O2112.33 (16)H14B—C14—H14C109.5
C4—C5—C13125.09 (18)O5—C15—H15A109.5
O2—C5—C13122.58 (17)O5—C15—H15B109.5
O3—C6—O2115.63 (17)H15A—C15—H15B109.5
O3—C6—C7126.07 (18)O5—C15—H15C109.5
O2—C6—C7118.30 (17)H15A—C15—H15C109.5
C8—C7—C12120.78 (17)H15B—C15—H15C109.5
C8—C7—C6117.79 (17)O1D—S1D—C1D105.68 (6)
C12—C7—C6121.43 (18)O1D—S1D—C1Di105.68 (6)
O4—C8—C9116.93 (17)C1D—S1D—C1Di98.23 (10)
O4—C8—C7122.14 (17)S1D—C1D—H4109.5
C9—C8—C7120.93 (18)S1D—C1D—H3109.5
C10—C9—C8117.89 (18)H4—C1D—H3109.5
C10—C9—H9121.1S1D—C1D—H5109.5
C8—C9—H9121.1H4—C1D—H5109.5
O5—C10—C9123.89 (18)H3—C1D—H5109.5
C13—C1—C2—C30.000 (1)C15—O5—C10—C11180.0
C14—C1—C2—C3180.0C8—C9—C10—O5180.0
C1—C2—C3—O1180.0C8—C9—C10—C110.0
C1—C2—C3—C40.000 (1)O5—C10—C11—C12180.0
O1—C3—C4—C5180.000 (1)C9—C10—C11—C120.0
C2—C3—C4—C50.000 (1)C10—C11—C12—C70.0
C3—C4—C5—O2180.0C10—C11—C12—C13180.0
C3—C4—C5—C130.0C8—C7—C12—C110.0
C6—O2—C5—C4180.0C6—C7—C12—C11180.0
C6—O2—C5—C130.0C8—C7—C12—C13180.0
C5—O2—C6—O3180.0C6—C7—C12—C130.0
C5—O2—C6—C70.0C4—C5—C13—C10.0
O3—C6—C7—C80.0O2—C5—C13—C1180.0
O2—C6—C7—C8180.0C4—C5—C13—C12180.0
O3—C6—C7—C12180.0O2—C5—C13—C120.000 (1)
O2—C6—C7—C120.0C2—C1—C13—C50.000 (1)
C12—C7—C8—O4180.0C14—C1—C13—C5180.0
C6—C7—C8—O40.0C2—C1—C13—C12180.0
C12—C7—C8—C90.0C14—C1—C13—C120.0
C6—C7—C8—C9180.0C11—C12—C13—C5180.0
O4—C8—C9—C10180.0C7—C12—C13—C50.0
C7—C8—C9—C100.0C11—C12—C13—C10.0
C15—O5—C10—C90.0C7—C12—C13—C1180.0
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O1Dii0.801.822.617 (2)175
O4—H1O4···O30.891.762.575 (2)151
O4—H1O4···O3iii0.892.593.162 (2)123
C4—H4C···O1iv0.932.623.467 (2)152
C1D—H4···O40.962.703.401 (2)130
C1D—H5···O2iii0.962.663.2970 (19)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O1⋯O1D i 0.801.822.617 (2)175
O4—H1O4⋯O30.891.762.575 (2)151
O4—H1O4⋯O3ii 0.892.593.162 (2)123
C4—H4C⋯O1iii 0.932.623.467 (2)152
C1D—H4⋯O40.962.703.401 (2)130
C1D—H5⋯O2ii 0.962.663.2970 (19)124

Symmetry codes: (i) ; (ii) ; (iii) .

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