| Literature DB >> 23795051 |
Sreekanth Dasari1, Kristin I Miller, John A Kalaitzis, Mohan Bhadbhade, Brett A Neilan.
Abstract
THE TITLE COMPOUND (SYSTEMATIC NAME: 3,7-dihy-droxy-9-meth-oxy-1-methyl-6H-benzo[c]chromen-6-one dimethyl sulfoxide monosolvate), C15H12O5·C2H6OS, was isolated from an unidentified endophytic fungus (belonging to class Ascomycetes) of Taxus sp. In the crystal, both the alternariol 9-O-methyl ether (AME) and the dimethyl sulfoxide (DMSO) mol-ecules exhibit crystallographic mirror symmetry. One of the hy-droxy groups makes bifurcated hydrogen bonds, viz. an intra-molecular bond with the carbonyl group and an inter-molecular bond with the carbonyl group in an inversion-related AME mol-ecule. In the crystal, the AME mol-ecules are organized into stacks parallel with the b axis by π-π inter-actions between centrosymmetrically related mol-ecules [the distance between the centroid of the central ring and the centroid of the meth-oxy-substituted benzene ring in the next mol-ecule of the stack is 3.6184 (5) Å]. Pairs of DMSO mol-ecules, linked via centrosymmetric C-H⋯O contacts, are inserted into the voids created by the AME mol-ecules, making O-H⋯O and C-H⋯O contacts with the hosts.Entities:
Year: 2013 PMID: 23795051 PMCID: PMC3685032 DOI: 10.1107/S1600536813012294
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H12O5·C2H6OS | |
| Monoclinic, | Mo |
| Hall symbol: -C 2y | Cell parameters from 4872 reflections |
| θ = 2.7–30.6° | |
| µ = 0.24 mm−1 | |
| β = 126.815 (3)° | Plate, colourless |
| 0.38 × 0.09 × 0.05 mm | |
| Bruker Kappa APEXII CCD diffractometer | 1524 independent reflections |
| Radiation source: fine-focus sealed tube | 1382 reflections with |
| Graphite monochromator | |
| φ scans, and ω scans with κ offsets | θmax = 25.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 7177 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1524 reflections | (Δ/σ)max < 0.001 |
| 144 parameters | Δρmax = 0.27 e Å−3 |
| 3 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.39016 (10) | 0.0000 | 0.94667 (11) | 0.0391 (4) | |
| H1O1 | 0.3537 | 0.0000 | 0.9575 | 0.059* | |
| O2 | 0.42281 (8) | 0.0000 | 0.67046 (11) | 0.0206 (3) | |
| O3 | 0.45897 (9) | 0.0000 | 0.55957 (11) | 0.0265 (4) | |
| O4 | 0.34069 (9) | 0.0000 | 0.35176 (11) | 0.0237 (3) | |
| H1O4 | 0.3931 | 0.0000 | 0.4162 | 0.036* | |
| O5 | 0.04062 (9) | 0.0000 | 0.22240 (11) | 0.0268 (4) | |
| C1 | 0.21796 (12) | 0.0000 | 0.64985 (15) | 0.0174 (4) | |
| C2 | 0.25831 (11) | 0.0000 | 0.76077 (13) | 0.0205 (4) | |
| H2 | 0.2229 | 0.0000 | 0.7842 | 0.025* | |
| C3 | 0.34992 (13) | 0.0000 | 0.83847 (15) | 0.0227 (5) | |
| C4 | 0.40259 (13) | 0.0000 | 0.80403 (15) | 0.0209 (4) | |
| H4C | 0.4639 | 0.0000 | 0.8540 | 0.025* | |
| C5 | 0.36216 (13) | 0.0000 | 0.69341 (16) | 0.0173 (4) | |
| C6 | 0.39827 (13) | 0.0000 | 0.56791 (16) | 0.0190 (4) | |
| C7 | 0.30546 (12) | 0.0000 | 0.47951 (15) | 0.0172 (4) | |
| C8 | 0.28052 (13) | 0.0000 | 0.37232 (16) | 0.0185 (4) | |
| C9 | 0.19222 (13) | 0.0000 | 0.28315 (15) | 0.0202 (4) | |
| H9 | 0.1757 | 0.0000 | 0.2126 | 0.024* | |
| C10 | 0.12935 (13) | 0.0000 | 0.30239 (16) | 0.0192 (4) | |
| C11 | 0.15201 (12) | 0.0000 | 0.40773 (13) | 0.0194 (4) | |
| H11 | 0.1077 | 0.0000 | 0.4170 | 0.023* | |
| C12 | 0.24039 (13) | 0.0000 | 0.49846 (16) | 0.0161 (4) | |
| C13 | 0.27066 (12) | 0.0000 | 0.61190 (15) | 0.0162 (4) | |
| C14 | 0.11825 (10) | 0.0000 | 0.57677 (11) | 0.0218 (4) | |
| H14A | 0.0970 | −0.1146 | 0.5317 | 0.033* | 0.50 |
| H14B | 0.0970 | 0.1146 | 0.5317 | 0.033* | 0.50 |
| H14C | 0.0974 | 0.0000 | 0.6204 | 0.033* | |
| C15 | 0.01044 (14) | 0.0000 | 0.11184 (16) | 0.0292 (5) | |
| H15A | −0.0530 | 0.0000 | 0.0641 | 0.044* | |
| H15B | 0.0320 | −0.1146 | 0.0986 | 0.044* | 0.50 |
| H15C | 0.0320 | 0.1146 | 0.0986 | 0.044* | 0.50 |
| S1D | 0.30260 (3) | 0.0000 | 0.10913 (4) | 0.02538 (19) | |
| O1D | 0.27939 (9) | 0.0000 | −0.00407 (11) | 0.0298 (4) | |
| C1D | 0.37818 (10) | 0.1967 (2) | 0.17933 (12) | 0.0285 (4) | |
| H4 | 0.3992 | 0.1972 | 0.2538 | 0.043* | |
| H3 | 0.3489 | 0.3181 | 0.1455 | 0.043* | |
| H5 | 0.4273 | 0.1808 | 0.1765 | 0.043* |
| O1 | 0.0209 (8) | 0.0812 (13) | 0.0132 (7) | 0.000 | 0.0091 (7) | 0.000 |
| O2 | 0.0136 (7) | 0.0319 (7) | 0.0157 (7) | 0.000 | 0.0084 (6) | 0.000 |
| O3 | 0.0170 (7) | 0.0435 (9) | 0.0217 (8) | 0.000 | 0.0131 (6) | 0.000 |
| O4 | 0.0209 (7) | 0.0340 (8) | 0.0190 (7) | 0.000 | 0.0134 (6) | 0.000 |
| O5 | 0.0173 (7) | 0.0422 (9) | 0.0130 (7) | 0.000 | 0.0048 (6) | 0.000 |
| C1 | 0.0179 (10) | 0.0161 (9) | 0.0162 (9) | 0.000 | 0.0092 (8) | 0.000 |
| C2 | 0.0195 (10) | 0.0265 (10) | 0.0188 (10) | 0.000 | 0.0132 (9) | 0.000 |
| C3 | 0.0221 (10) | 0.0303 (11) | 0.0142 (10) | 0.000 | 0.0100 (9) | 0.000 |
| C4 | 0.0135 (9) | 0.0284 (10) | 0.0151 (10) | 0.000 | 0.0054 (8) | 0.000 |
| C5 | 0.0166 (9) | 0.0180 (9) | 0.0180 (10) | 0.000 | 0.0108 (8) | 0.000 |
| C6 | 0.0189 (10) | 0.0190 (9) | 0.0184 (10) | 0.000 | 0.0108 (8) | 0.000 |
| C7 | 0.0181 (10) | 0.0152 (9) | 0.0176 (10) | 0.000 | 0.0103 (9) | 0.000 |
| C8 | 0.0236 (10) | 0.0152 (9) | 0.0200 (10) | 0.000 | 0.0150 (9) | 0.000 |
| C9 | 0.0257 (11) | 0.0198 (9) | 0.0140 (9) | 0.000 | 0.0113 (9) | 0.000 |
| C10 | 0.0165 (9) | 0.0190 (9) | 0.0157 (10) | 0.000 | 0.0062 (8) | 0.000 |
| C11 | 0.0164 (10) | 0.0226 (9) | 0.0176 (10) | 0.000 | 0.0094 (9) | 0.000 |
| C12 | 0.0188 (9) | 0.0118 (8) | 0.0161 (9) | 0.000 | 0.0097 (8) | 0.000 |
| C13 | 0.0163 (9) | 0.0145 (9) | 0.0165 (10) | 0.000 | 0.0092 (8) | 0.000 |
| C14 | 0.0174 (10) | 0.0307 (10) | 0.0190 (10) | 0.000 | 0.0119 (9) | 0.000 |
| C15 | 0.0266 (12) | 0.0389 (12) | 0.0132 (10) | 0.000 | 0.0072 (9) | 0.000 |
| S1D | 0.0166 (3) | 0.0424 (3) | 0.0167 (3) | 0.000 | 0.0097 (2) | 0.000 |
| O1D | 0.0221 (8) | 0.0481 (9) | 0.0152 (7) | 0.000 | 0.0090 (6) | 0.000 |
| C1D | 0.0306 (8) | 0.0267 (8) | 0.0234 (8) | 0.0054 (6) | 0.0136 (7) | 0.0019 (6) |
| O1—C3 | 1.351 (2) | C7—C12 | 1.423 (3) |
| O1—H1O1 | 0.8003 | C8—C9 | 1.386 (3) |
| O2—C6 | 1.349 (2) | C9—C10 | 1.385 (3) |
| O2—C5 | 1.386 (2) | C9—H9 | 0.9300 |
| O3—C6 | 1.228 (2) | C10—C11 | 1.403 (2) |
| O4—C8 | 1.350 (2) | C11—C12 | 1.393 (3) |
| O4—H1O4 | 0.8859 | C11—H11 | 0.9300 |
| O5—C10 | 1.360 (2) | C12—C13 | 1.472 (3) |
| O5—C15 | 1.431 (2) | C14—H14A | 0.9600 |
| C1—C2 | 1.388 (2) | C14—H14B | 0.9600 |
| C1—C13 | 1.423 (3) | C14—H14C | 0.9600 |
| C1—C14 | 1.508 (2) | C15—H15A | 0.9600 |
| C2—C3 | 1.394 (3) | C15—H15B | 0.9600 |
| C2—H2 | 0.9300 | C15—H15C | 0.9600 |
| C3—C4 | 1.378 (3) | S1D—O1D | 1.5166 (15) |
| C4—C5 | 1.383 (3) | S1D—C1D | 1.7790 (15) |
| C4—H4C | 0.9300 | S1D—C1Di | 1.7790 (15) |
| C5—C13 | 1.401 (3) | C1D—H4 | 0.9600 |
| C6—C7 | 1.437 (3) | C1D—H3 | 0.9600 |
| C7—C8 | 1.415 (3) | C1D—H5 | 0.9600 |
| C3—O1—H1O1 | 109.6 | O5—C10—C11 | 113.60 (17) |
| C6—O2—C5 | 122.59 (15) | C9—C10—C11 | 122.51 (17) |
| C8—O4—H1O4 | 105.8 | C12—C11—C10 | 120.51 (16) |
| C10—O5—C15 | 118.07 (16) | C12—C11—H11 | 119.7 |
| C2—C1—C13 | 119.87 (17) | C10—C11—H11 | 119.7 |
| C2—C1—C14 | 115.84 (16) | C11—C12—C7 | 117.39 (17) |
| C13—C1—C14 | 124.30 (16) | C11—C12—C13 | 124.49 (17) |
| C1—C2—C3 | 122.50 (18) | C7—C12—C13 | 118.13 (17) |
| C1—C2—H2 | 118.7 | C5—C13—C1 | 115.19 (17) |
| C3—C2—H2 | 118.7 | C5—C13—C12 | 116.97 (17) |
| O1—C3—C4 | 117.92 (18) | C1—C13—C12 | 127.83 (17) |
| O1—C3—C2 | 123.20 (18) | C1—C14—H14A | 109.5 |
| C4—C3—C2 | 118.88 (18) | C1—C14—H14B | 109.5 |
| C3—C4—C5 | 118.47 (18) | H14A—C14—H14B | 109.5 |
| C3—C4—H4C | 120.8 | C1—C14—H14C | 109.5 |
| C5—C4—H4C | 120.8 | H14A—C14—H14C | 109.5 |
| C4—C5—O2 | 112.33 (16) | H14B—C14—H14C | 109.5 |
| C4—C5—C13 | 125.09 (18) | O5—C15—H15A | 109.5 |
| O2—C5—C13 | 122.58 (17) | O5—C15—H15B | 109.5 |
| O3—C6—O2 | 115.63 (17) | H15A—C15—H15B | 109.5 |
| O3—C6—C7 | 126.07 (18) | O5—C15—H15C | 109.5 |
| O2—C6—C7 | 118.30 (17) | H15A—C15—H15C | 109.5 |
| C8—C7—C12 | 120.78 (17) | H15B—C15—H15C | 109.5 |
| C8—C7—C6 | 117.79 (17) | O1D—S1D—C1D | 105.68 (6) |
| C12—C7—C6 | 121.43 (18) | O1D—S1D—C1Di | 105.68 (6) |
| O4—C8—C9 | 116.93 (17) | C1D—S1D—C1Di | 98.23 (10) |
| O4—C8—C7 | 122.14 (17) | S1D—C1D—H4 | 109.5 |
| C9—C8—C7 | 120.93 (18) | S1D—C1D—H3 | 109.5 |
| C10—C9—C8 | 117.89 (18) | H4—C1D—H3 | 109.5 |
| C10—C9—H9 | 121.1 | S1D—C1D—H5 | 109.5 |
| C8—C9—H9 | 121.1 | H4—C1D—H5 | 109.5 |
| O5—C10—C9 | 123.89 (18) | H3—C1D—H5 | 109.5 |
| C13—C1—C2—C3 | 0.000 (1) | C15—O5—C10—C11 | 180.0 |
| C14—C1—C2—C3 | 180.0 | C8—C9—C10—O5 | 180.0 |
| C1—C2—C3—O1 | 180.0 | C8—C9—C10—C11 | 0.0 |
| C1—C2—C3—C4 | 0.000 (1) | O5—C10—C11—C12 | 180.0 |
| O1—C3—C4—C5 | 180.000 (1) | C9—C10—C11—C12 | 0.0 |
| C2—C3—C4—C5 | 0.000 (1) | C10—C11—C12—C7 | 0.0 |
| C3—C4—C5—O2 | 180.0 | C10—C11—C12—C13 | 180.0 |
| C3—C4—C5—C13 | 0.0 | C8—C7—C12—C11 | 0.0 |
| C6—O2—C5—C4 | 180.0 | C6—C7—C12—C11 | 180.0 |
| C6—O2—C5—C13 | 0.0 | C8—C7—C12—C13 | 180.0 |
| C5—O2—C6—O3 | 180.0 | C6—C7—C12—C13 | 0.0 |
| C5—O2—C6—C7 | 0.0 | C4—C5—C13—C1 | 0.0 |
| O3—C6—C7—C8 | 0.0 | O2—C5—C13—C1 | 180.0 |
| O2—C6—C7—C8 | 180.0 | C4—C5—C13—C12 | 180.0 |
| O3—C6—C7—C12 | 180.0 | O2—C5—C13—C12 | 0.000 (1) |
| O2—C6—C7—C12 | 0.0 | C2—C1—C13—C5 | 0.000 (1) |
| C12—C7—C8—O4 | 180.0 | C14—C1—C13—C5 | 180.0 |
| C6—C7—C8—O4 | 0.0 | C2—C1—C13—C12 | 180.0 |
| C12—C7—C8—C9 | 0.0 | C14—C1—C13—C12 | 0.0 |
| C6—C7—C8—C9 | 180.0 | C11—C12—C13—C5 | 180.0 |
| O4—C8—C9—C10 | 180.0 | C7—C12—C13—C5 | 0.0 |
| C7—C8—C9—C10 | 0.0 | C11—C12—C13—C1 | 0.0 |
| C15—O5—C10—C9 | 0.0 | C7—C12—C13—C1 | 180.0 |
| H··· | ||||
| O1—H1 | 0.80 | 1.82 | 2.617 (2) | 175 |
| O4—H1 | 0.89 | 1.76 | 2.575 (2) | 151 |
| O4—H1 | 0.89 | 2.59 | 3.162 (2) | 123 |
| C4—H4 | 0.93 | 2.62 | 3.467 (2) | 152 |
| C1 | 0.96 | 2.70 | 3.401 (2) | 130 |
| C1 | 0.96 | 2.66 | 3.2970 (19) | 124 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.80 | 1.82 | 2.617 (2) | 175 |
| O4—H1 | 0.89 | 1.76 | 2.575 (2) | 151 |
| O4—H1 | 0.89 | 2.59 | 3.162 (2) | 123 |
| C4—H4 | 0.93 | 2.62 | 3.467 (2) | 152 |
| C1 | 0.96 | 2.70 | 3.401 (2) | 130 |
| C1 | 0.96 | 2.66 | 3.2970 (19) | 124 |
Symmetry codes: (i) ; (ii) ; (iii) .