Literature DB >> 23795040

Methyl 2-(5-chloro-1-methyl-2-oxo-2,3-di-hydro-1H-indol-3-ylidene)acetate.

Piskala Subburaman Kannan1, Panneerselvam Yuvaraj, Karthikeyan Manivannan, Boreddy S R Reddy, A Subbiahpandi.   

Abstract

The title compound, C12H10ClNO3, the indoline ring system is essentially planar, with a maximum deviation of 0.009 Å for the N atom. The indoline ring and acetate group are essentially coplanar, with a maximum deviation of 0.086 Å for the O atom. The mean plane through the methoxy-carbonyl-methyl group forms a dihedral angle of 3.68 (5)° with the plane of the indoline ring system. The mol-ecular structure is stabilized by an intra-molecular C-H⋯O hydrogen-bond inter-action. In the crystal, π-π stacking inter-actions [centroid-centroid distance = 3.7677 (8) Å] occur between benzene rings, forming a chain running along the c-axis direction.

Entities:  

Year:  2013        PMID: 23795040      PMCID: PMC3684938          DOI: 10.1107/S1600536813011768

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Chai et al. (2006 ▶); Nieto et al. (2005 ▶); Singh et al. (2000 ▶); Andreani et al. (2001 ▶); Quetin-Leclercq (1994 ▶); Mukhopadhyay et al. (1981 ▶); Taylor et al. (1999 ▶). For closely related structures, see: Hu et al. (2011 ▶); Han & Luo (2012 ▶); Deng (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H10ClNO3 M = 251.66 Monoclinic, a = 8.4709 (7) Å b = 17.1658 (13) Å c = 7.9481 (6) Å β = 107.228 (4)° V = 1103.88 (15) Å3 Z = 4 Mo Kα radiation μ = 0.34 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.903, T max = 0.934 10447 measured reflections 2815 independent reflections 2410 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.138 S = 1.13 2815 reflections 157 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813011768/bx2438sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813011768/bx2438Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813011768/bx2438Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10ClNO3F(000) = 520
Mr = 251.66Dx = 1.514 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2857 reflections
a = 8.4709 (7) Åθ = 2.4–28.6°
b = 17.1658 (13) ŵ = 0.34 mm1
c = 7.9481 (6) ÅT = 293 K
β = 107.228 (4)°Block, colourless
V = 1103.88 (15) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2815 independent reflections
Radiation source: fine-focus sealed tube2410 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω and φ scansθmax = 28.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→11
Tmin = 0.903, Tmax = 0.934k = −23→23
10447 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
2815 reflectionsΔρmax = 0.34 e Å3
157 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.008 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.18640 (15)0.52152 (8)0.41988 (16)0.0337 (3)
C20.22645 (18)0.44379 (9)0.44263 (18)0.0400 (3)
H20.32240.42830.52810.048*
C30.12324 (18)0.38846 (8)0.33765 (19)0.0396 (3)
H30.14870.33570.35140.047*
C4−0.01720 (16)0.41357 (7)0.21330 (17)0.0321 (3)
C5−0.05973 (15)0.49301 (7)0.18943 (15)0.0287 (3)
C60.04383 (15)0.54819 (7)0.29523 (15)0.0317 (3)
H60.01870.60100.28310.038*
C7−0.21570 (16)0.49743 (7)0.04971 (15)0.0306 (3)
C8−0.25984 (18)0.41402 (7)−0.00755 (18)0.0344 (3)
C9−0.1339 (2)0.28462 (9)0.0829 (2)0.0509 (4)
H9A−0.23320.2668−0.00220.076*
H9B−0.12670.26250.19600.076*
H9C−0.03980.26870.04760.076*
C10−0.31915 (15)0.55312 (8)−0.03603 (16)0.0349 (3)
H10−0.41260.5363−0.12320.042*
C11−0.30207 (15)0.63753 (7)−0.00835 (16)0.0341 (3)
C12−0.4227 (2)0.75770 (8)−0.1167 (2)0.0499 (4)
H12A−0.43110.7724−0.00310.075*
H12B−0.51550.7782−0.20680.075*
H12C−0.32220.7783−0.13140.075*
N1−0.13690 (14)0.36835 (6)0.09414 (14)0.0370 (3)
O1−0.38178 (14)0.39168 (7)−0.12194 (15)0.0484 (3)
O2−0.19597 (13)0.67151 (6)0.10265 (16)0.0503 (3)
O3−0.42172 (12)0.67452 (6)−0.12966 (13)0.0426 (3)
Cl10.31706 (4)0.58922 (2)0.55565 (4)0.04557 (17)
U11U22U33U12U13U23
C10.0283 (6)0.0363 (7)0.0319 (6)−0.0017 (5)0.0015 (5)0.0008 (4)
C20.0347 (7)0.0386 (7)0.0406 (6)0.0058 (6)0.0016 (5)0.0059 (5)
C30.0409 (7)0.0302 (6)0.0437 (7)0.0054 (5)0.0065 (6)0.0047 (5)
C40.0331 (7)0.0284 (6)0.0340 (6)−0.0013 (4)0.0084 (5)−0.0007 (4)
C50.0277 (6)0.0265 (6)0.0306 (5)0.0001 (4)0.0065 (4)−0.0003 (4)
C60.0285 (6)0.0303 (6)0.0324 (6)−0.0003 (5)0.0031 (4)−0.0001 (4)
C70.0289 (6)0.0299 (6)0.0307 (6)−0.0030 (4)0.0052 (4)−0.0027 (4)
C80.0372 (7)0.0298 (6)0.0346 (6)−0.0055 (5)0.0084 (5)−0.0045 (4)
C90.0618 (10)0.0273 (7)0.0595 (9)−0.0019 (6)0.0116 (7)−0.0034 (6)
C100.0298 (6)0.0344 (7)0.0346 (6)−0.0026 (5)0.0003 (5)−0.0025 (5)
C110.0298 (6)0.0345 (7)0.0332 (6)0.0040 (5)0.0021 (4)0.0012 (5)
C120.0546 (9)0.0351 (8)0.0501 (8)0.0081 (6)0.0003 (7)0.0075 (6)
N10.0406 (6)0.0272 (6)0.0399 (6)−0.0034 (4)0.0068 (5)−0.0045 (4)
O10.0443 (6)0.0404 (5)0.0503 (6)−0.0094 (4)−0.0018 (5)−0.0099 (4)
O20.0423 (6)0.0347 (5)0.0547 (6)0.0022 (4)−0.0151 (4)−0.0065 (4)
O30.0408 (6)0.0336 (5)0.0406 (5)0.0029 (4)−0.0074 (4)0.0021 (4)
Cl10.0370 (2)0.0450 (3)0.0434 (2)−0.00716 (13)−0.00546 (16)−0.00314 (13)
C1—C21.3753 (19)C8—O11.2183 (18)
C1—C61.3932 (16)C8—N11.3615 (18)
C1—Cl11.7415 (13)C9—N11.4408 (18)
C2—C31.389 (2)C9—H9A0.9600
C2—H20.9300C9—H9B0.9600
C3—C41.3717 (18)C9—H9C0.9600
C3—H30.9300C10—C111.4661 (19)
C4—N11.3995 (16)C10—H100.9300
C4—C51.4089 (17)C11—O21.2070 (16)
C5—C61.3917 (16)C11—O31.3346 (15)
C5—C71.4545 (17)C12—O31.4320 (16)
C6—H60.9300C12—H12A0.9600
C7—C101.3389 (19)C12—H12B0.9600
C7—C81.5153 (17)C12—H12C0.9600
C2—C1—C6122.71 (12)N1—C8—C7106.77 (11)
C2—C1—Cl1118.64 (10)N1—C9—H9A109.5
C6—C1—Cl1118.64 (10)N1—C9—H9B109.5
C1—C2—C3119.83 (13)H9A—C9—H9B109.5
C1—C2—H2120.1N1—C9—H9C109.5
C3—C2—H2120.1H9A—C9—H9C109.5
C4—C3—C2118.36 (12)H9B—C9—H9C109.5
C4—C3—H3120.8C7—C10—C11127.50 (11)
C2—C3—H3120.8C7—C10—H10116.3
C3—C4—N1127.82 (11)C11—C10—H10116.3
C3—C4—C5122.27 (12)O2—C11—O3122.67 (12)
N1—C4—C5109.92 (11)O2—C11—C10127.33 (11)
C6—C5—C4119.15 (11)O3—C11—C10109.98 (11)
C6—C5—C7133.90 (11)O3—C12—H12A109.5
C4—C5—C7106.94 (11)O3—C12—H12B109.5
C5—C6—C1117.68 (11)H12A—C12—H12B109.5
C5—C6—H6121.2O3—C12—H12C109.5
C1—C6—H6121.2H12A—C12—H12C109.5
C10—C7—C5137.34 (12)H12B—C12—H12C109.5
C10—C7—C8117.12 (12)C8—N1—C4110.84 (10)
C5—C7—C8105.52 (11)C8—N1—C9124.20 (12)
O1—C8—N1126.31 (12)C4—N1—C9124.94 (12)
O1—C8—C7126.92 (13)C11—O3—C12116.21 (11)
C6—C1—C2—C30.6 (2)C5—C7—C8—O1179.90 (14)
Cl1—C1—C2—C3179.16 (10)C10—C7—C8—N1178.76 (11)
C1—C2—C3—C4−0.1 (2)C5—C7—C8—N10.12 (13)
C2—C3—C4—N1179.68 (12)C5—C7—C10—C11−0.4 (2)
C2—C3—C4—C5−0.2 (2)C8—C7—C10—C11−178.48 (12)
C3—C4—C5—C60.01 (19)C7—C10—C11—O2−4.1 (2)
N1—C4—C5—C6−179.87 (10)C7—C10—C11—O3174.29 (13)
C3—C4—C5—C7−179.19 (12)O1—C8—N1—C4−179.33 (13)
N1—C4—C5—C70.93 (13)C7—C8—N1—C40.45 (14)
C4—C5—C6—C10.42 (17)O1—C8—N1—C9−0.9 (2)
C7—C5—C6—C1179.36 (11)C7—C8—N1—C9178.84 (12)
C2—C1—C6—C5−0.71 (19)C3—C4—N1—C8179.24 (13)
Cl1—C1—C6—C5−179.32 (9)C5—C4—N1—C8−0.88 (14)
C6—C5—C7—C102.1 (2)C3—C4—N1—C90.9 (2)
C4—C5—C7—C10−178.84 (15)C5—C4—N1—C9−179.26 (13)
C6—C5—C7—C8−179.66 (13)O2—C11—O3—C12−2.8 (2)
C4—C5—C7—C8−0.63 (12)C10—C11—O3—C12178.73 (12)
C10—C7—C8—O1−1.5 (2)
D—H···AD—HH···AD···AD—H···A
C6—H6···O20.932.303.0181 (17)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯O20.932.303.0181 (17)134
  12 in total

1.  Antifungal activity of venenatine, an indole alkaloid isolated from Alstonia venenata.

Authors:  U P Singh; B K Sarma; P K Mishra; A B Ray
Journal:  Folia Microbiol (Praha)       Date:  2000       Impact factor: 2.099

Review 2.  [Potential anticancer and antiparasitic indole alkaloids].

Authors:  J Quetin-Leclercq
Journal:  J Pharm Belg       Date:  1994 May-Jun

3.  Benzenesulfonamide analogs of fluoroquinolones. Antibacterial activity and QSAR studies.

Authors:  M J Nieto; F L Alovero; R H Manzo; Maria R Mazzieri
Journal:  Eur J Med Chem       Date:  2005-04       Impact factor: 6.514

4.  Pyrido [1,2a] indole derivatives identified as novel non-nucleoside reverse transcriptase inhibitors of human immunodeficiency virus type 1.

Authors:  D L Taylor; P S Ahmed; P Chambers; A S Tyms; J Bedard; J Duchaine; G Falardeau; J F Lavallée; W Brown; R F Rando; T Bowlin
Journal:  Antivir Chem Chemother       Date:  1999-03

5.  Synthesis and antitumor activity of substituted 3-(5-imidazo[2,1-b]thiazolylmethylene)-2-indolinones.

Authors:  A Andreani; M Granaiola; A Leoni; A Locatelli; R Morigi; M Rambaldi; G Giorgi; L Salvini; V Garaliene
Journal:  Anticancer Drug Des       Date:  2001 Apr-Jun

6.  Anticancer indole alkaloids of Rhazya stricta.

Authors:  S Mukhopadhyay; G A Handy; S Funayama; G A Cordell
Journal:  J Nat Prod       Date:  1981 Nov-Dec       Impact factor: 4.050

7.  Methyl 2-(1H-indole-3-carboxamido)-acetate.

Authors:  Fang Hu; Le Zheng; Xiang Chao Zeng; Kai Ping Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26

8.  2-Oxoindolin-3-yl acetate.

Authors:  Qiang Deng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-15

9.  5-Chloro-1H-indole-3-carb-oxy-lic acid.

Authors:  Xue-Lian Han; Yang-Hui Luo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.