Literature DB >> 23795036

1-{(E)-[(2-Fluoro-5-nitro-phen-yl)imino]-meth-yl}naphthalen-2-ol.

Alan R Kennedy1, Mehmet Akkurt, Antar A Abdelhamid, Shaaban K Mohamed, Gary J Miller.   

Abstract

The title mol-ecule, C17H11FN2O3, is nearly planar [maximum deviation = 0.197 (1) Å] and the mol-ecular conformation is stabilized by an N-H⋯O hydrogen bond forming an S(6) ring motif. The H atom of the intra-molecular hydrogen bond was found to be disordered over two sites and thus both the hy-droxy and keto tautomers are simultaneously present in the solid. Refinement of the occupancy of this site suggests that the hy-droxy form is the major component [occupancy refined to 0.59 (3):0.41 (3)]. Bond lengths are also largely consistent with dominance of the hy-droxy form. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming layers parallel to (101). π-π stacking inter-actions [centroid-centroid distances = 3.5649 (9) and 3.7579 (9) Å] inter-connect these layers.

Entities:  

Year:  2013        PMID: 23795036      PMCID: PMC3684934          DOI: 10.1107/S1600536813012099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the broad range of biological applications of Schiff bases, see, for example: Cozzi (2004 ▶); Chandra & Sangeetika (2004 ▶); Sari et al. (2003 ▶); Verma et al. (2004 ▶). For the significance of fluorine atoms in drug structures, see: Blair et al. (2000 ▶); Kirk et al. (1979 ▶); LeBars et al. (1987 ▶). For a related structure, see: Akkurt et al. (2012 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H11FN2O3 M = 310.28 Monoclinic, a = 14.2226 (6) Å b = 13.0856 (5) Å c = 7.3801 (3) Å β = 94.151 (4)° V = 1369.92 (10) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 123 K 0.5 × 0.2 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.973, T max = 0.994 15943 measured reflections 4043 independent reflections 3166 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.135 S = 1.07 4043 reflections 215 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813012099/sj5319sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012099/sj5319Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012099/sj5319Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H11FN2O3F(000) = 640
Mr = 310.28Dx = 1.504 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5692 reflections
a = 14.2226 (6) Åθ = 3.2–30.7°
b = 13.0856 (5) ŵ = 0.11 mm1
c = 7.3801 (3) ÅT = 123 K
β = 94.151 (4)°Cut rod, yellow
V = 1369.92 (10) Å30.5 × 0.2 × 0.05 mm
Z = 4
Oxford Diffraction Xcalibur Eos diffractometer4043 independent reflections
Radiation source: Enhance (Mo) X-ray Source3166 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
Detector resolution: 16.0727 pixels mm-1θmax = 30.8°, θmin = 3.2°
ω scansh = −19→20
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −18→18
Tmin = 0.973, Tmax = 0.994l = −10→10
15943 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0528P)2 + 0.7073P] where P = (Fo2 + 2Fc2)/3
4043 reflections(Δ/σ)max < 0.001
215 parametersΔρmax = 0.33 e Å3
2 restraintsΔρmin = −0.27 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F10.46913 (7)0.33478 (7)0.24068 (14)0.0300 (3)
O10.35134 (8)0.12068 (8)0.35743 (15)0.0236 (3)
O20.21721 (11)0.66754 (10)0.5527 (3)0.0535 (6)
O30.33368 (11)0.75984 (10)0.4783 (2)0.0488 (5)
N10.31672 (9)0.30387 (9)0.41994 (17)0.0185 (3)
N20.29390 (11)0.67768 (10)0.4896 (2)0.0313 (4)
C10.21630 (10)0.17180 (10)0.51171 (19)0.0171 (3)
C20.27574 (10)0.09654 (11)0.44206 (19)0.0191 (4)
C30.25569 (11)−0.00890 (11)0.4642 (2)0.0228 (4)
C40.18177 (11)−0.03893 (11)0.5579 (2)0.0240 (4)
C50.11990 (11)0.03344 (11)0.6319 (2)0.0215 (4)
C60.04339 (12)0.00082 (13)0.7289 (2)0.0280 (5)
C7−0.01858 (11)0.06974 (13)0.7933 (2)0.0279 (5)
C8−0.00642 (11)0.17414 (13)0.7622 (2)0.0258 (4)
C90.06885 (10)0.20868 (12)0.6710 (2)0.0221 (4)
C100.13476 (10)0.13968 (11)0.60456 (19)0.0176 (3)
C110.24075 (10)0.27705 (11)0.49616 (18)0.0177 (3)
C120.34637 (10)0.40451 (10)0.39717 (19)0.0181 (3)
C130.42636 (10)0.41877 (11)0.3009 (2)0.0212 (4)
C140.46365 (11)0.51311 (13)0.2649 (2)0.0251 (4)
C150.42032 (11)0.59926 (12)0.3290 (2)0.0247 (4)
C160.34099 (11)0.58627 (11)0.4245 (2)0.0226 (4)
C170.30302 (10)0.49186 (11)0.4606 (2)0.0200 (4)
H10.357 (3)0.1877 (8)0.365 (5)0.0350*0.59 (3)
H30.29440−0.058800.413000.0270*
H40.17090−0.109800.574600.0290*
H60.03470−0.070100.749800.0340*
H7−0.069600.046700.858800.0330*
H8−0.050300.221800.804200.0310*
H90.076500.280000.652600.0260*
H110.201200.328000.541900.0210*
H140.517900.518900.197700.0300*
H150.444400.665600.307900.0300*
H170.248500.486500.527100.0240*
H20.350 (3)0.253 (3)0.380 (6)0.0280*0.41 (3)
U11U22U33U12U13U23
F10.0281 (5)0.0236 (5)0.0402 (6)0.0041 (4)0.0155 (4)−0.0009 (4)
O10.0250 (5)0.0173 (5)0.0298 (6)0.0025 (4)0.0100 (4)−0.0002 (4)
O20.0504 (9)0.0238 (7)0.0908 (12)0.0049 (6)0.0365 (9)−0.0039 (7)
O30.0531 (9)0.0143 (6)0.0801 (11)−0.0041 (6)0.0128 (8)−0.0018 (6)
N10.0198 (6)0.0141 (6)0.0220 (6)0.0010 (4)0.0038 (5)0.0016 (4)
N20.0368 (8)0.0152 (6)0.0423 (8)0.0018 (6)0.0056 (7)0.0009 (6)
C10.0186 (6)0.0139 (6)0.0187 (6)0.0012 (5)0.0011 (5)−0.0005 (5)
C20.0217 (7)0.0161 (6)0.0193 (6)0.0021 (5)0.0007 (5)0.0000 (5)
C30.0282 (8)0.0148 (7)0.0253 (7)0.0024 (5)0.0012 (6)−0.0027 (5)
C40.0292 (8)0.0141 (6)0.0282 (8)−0.0028 (6)−0.0015 (6)0.0004 (6)
C50.0227 (7)0.0177 (7)0.0236 (7)−0.0033 (5)−0.0012 (6)0.0026 (5)
C60.0282 (8)0.0256 (8)0.0303 (8)−0.0075 (6)0.0023 (6)0.0062 (6)
C70.0231 (7)0.0336 (9)0.0274 (8)−0.0065 (6)0.0051 (6)0.0055 (7)
C80.0209 (7)0.0309 (8)0.0259 (7)−0.0003 (6)0.0048 (6)−0.0006 (6)
C90.0220 (7)0.0199 (7)0.0246 (7)−0.0004 (6)0.0040 (6)0.0003 (6)
C100.0186 (6)0.0166 (6)0.0175 (6)−0.0021 (5)0.0005 (5)0.0009 (5)
C110.0179 (6)0.0165 (6)0.0186 (6)0.0012 (5)0.0016 (5)−0.0009 (5)
C120.0179 (6)0.0150 (6)0.0213 (6)−0.0006 (5)0.0002 (5)0.0023 (5)
C130.0204 (7)0.0200 (7)0.0234 (7)0.0015 (5)0.0040 (6)−0.0001 (5)
C140.0196 (7)0.0282 (8)0.0280 (8)−0.0043 (6)0.0047 (6)0.0049 (6)
C150.0240 (7)0.0194 (7)0.0305 (8)−0.0062 (6)0.0002 (6)0.0061 (6)
C160.0249 (7)0.0149 (7)0.0279 (7)0.0005 (5)0.0006 (6)0.0007 (5)
C170.0205 (7)0.0159 (6)0.0239 (7)−0.0008 (5)0.0036 (5)0.0020 (5)
F1—C131.3471 (17)C8—C91.381 (2)
O1—C21.3203 (18)C9—C101.415 (2)
O2—N21.224 (2)C12—C171.396 (2)
O3—N21.2206 (19)C12—C131.397 (2)
O1—H10.882 (12)C13—C141.377 (2)
N1—C121.3967 (18)C14—C151.384 (2)
N1—C111.3019 (19)C15—C161.383 (2)
N2—C161.469 (2)C16—C171.382 (2)
N1—H20.88 (4)C3—H30.9500
C1—C111.427 (2)C4—H40.9500
C1—C21.418 (2)C6—H60.9500
C1—C101.451 (2)C7—H70.9500
C2—C31.421 (2)C8—H80.9500
C3—C41.358 (2)C9—H90.9500
C4—C51.428 (2)C11—H110.9500
C5—C101.423 (2)C14—H140.9500
C5—C61.411 (2)C15—H150.9500
C6—C71.370 (2)C17—H170.9500
C7—C81.398 (2)
C2—O1—H1106 (3)F1—C13—C12117.56 (12)
C11—N1—C12124.99 (13)F1—C13—C14118.58 (13)
O2—N2—C16118.44 (13)C12—C13—C14123.86 (13)
O3—N2—C16118.06 (15)C13—C14—C15118.48 (14)
O2—N2—O3123.49 (15)C14—C15—C16118.27 (14)
C11—N1—H2115 (3)N2—C16—C15118.34 (13)
C12—N1—H2120 (3)N2—C16—C17118.12 (14)
C10—C1—C11121.68 (12)C15—C16—C17123.54 (14)
C2—C1—C11119.07 (13)C12—C17—C16118.64 (13)
C2—C1—C10119.19 (12)C2—C3—H3120.00
C1—C2—C3120.18 (13)C4—C3—H3120.00
O1—C2—C3117.64 (13)C3—C4—H4119.00
O1—C2—C1122.17 (13)C5—C4—H4119.00
C2—C3—C4120.59 (14)C5—C6—H6119.00
C3—C4—C5121.62 (13)C7—C6—H6119.00
C4—C5—C6120.84 (14)C6—C7—H7120.00
C4—C5—C10119.46 (13)C8—C7—H7120.00
C6—C5—C10119.70 (14)C7—C8—H8120.00
C5—C6—C7121.06 (15)C9—C8—H8120.00
C6—C7—C8119.74 (15)C8—C9—H9119.00
C7—C8—C9120.61 (15)C10—C9—H9119.00
C8—C9—C10121.10 (14)N1—C11—H11120.00
C1—C10—C5118.81 (13)C1—C11—H11120.00
C5—C10—C9117.75 (13)C13—C14—H14121.00
C1—C10—C9123.44 (13)C15—C14—H14121.00
N1—C11—C1120.63 (13)C14—C15—H15121.00
N1—C12—C17125.97 (13)C16—C15—H15121.00
N1—C12—C13116.83 (12)C12—C17—H17121.00
C13—C12—C17117.20 (13)C16—C17—H17121.00
C11—N1—C12—C173.8 (2)C10—C5—C6—C71.8 (2)
C12—N1—C11—C1179.56 (13)C6—C5—C10—C1177.21 (13)
C11—N1—C12—C13−175.67 (14)C4—C5—C6—C7−177.11 (14)
O3—N2—C16—C15−9.7 (2)C4—C5—C10—C9176.47 (14)
O3—N2—C16—C17170.89 (15)C6—C5—C10—C9−2.4 (2)
O2—N2—C16—C15170.52 (17)C5—C6—C7—C80.3 (2)
O2—N2—C16—C17−8.9 (2)C6—C7—C8—C9−1.6 (2)
C10—C1—C2—C3−0.4 (2)C7—C8—C9—C100.9 (2)
C2—C1—C11—N1−0.3 (2)C8—C9—C10—C1−178.49 (14)
C10—C1—C2—O1−179.51 (13)C8—C9—C10—C51.1 (2)
C11—C1—C10—C96.1 (2)N1—C12—C13—C14179.10 (14)
C2—C1—C10—C53.5 (2)C17—C12—C13—F1179.39 (13)
C11—C1—C2—O1−2.4 (2)C17—C12—C13—C14−0.5 (2)
C11—C1—C2—C3176.71 (13)N1—C12—C13—F1−1.1 (2)
C11—C1—C10—C5−173.49 (13)N1—C12—C17—C16−179.28 (14)
C10—C1—C11—N1176.69 (13)C13—C12—C17—C160.2 (2)
C2—C1—C10—C9−176.87 (14)F1—C13—C14—C15−179.15 (13)
C1—C2—C3—C4−2.5 (2)C12—C13—C14—C150.7 (2)
O1—C2—C3—C4176.68 (14)C13—C14—C15—C16−0.7 (2)
C2—C3—C4—C52.2 (2)C14—C15—C16—N2−178.86 (14)
C3—C4—C5—C101.1 (2)C14—C15—C16—C170.5 (2)
C3—C4—C5—C6179.98 (15)N2—C16—C17—C12179.10 (13)
C4—C5—C10—C1−3.9 (2)C15—C16—C17—C12−0.3 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.88 (1)1.68 (2)2.4969 (16)152 (4)
C3—H3···O3i0.952.483.222 (2)135
C14—H14···O1ii0.952.353.1724 (19)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.88 (1)1.68 (2)2.4969 (16)152 (4)
C3—H3⋯O3i 0.952.483.222 (2)135
C14—H14⋯O1ii 0.952.353.1724 (19)145

Symmetry codes: (i) ; (ii) .

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