Literature DB >> 23795017

3-Nitro-phenol-1,3,5-triazine-2,4,6-tri-amine (2/1).

V Sangeetha1, N Kanagathara, G Chakkaravarthi, M K Marchewka, G Anbalagan.   

Abstract

The asymmetric unit of the title compound, C3H6N6·2C6H5NO3, contains one melamine and two 3-nitro-phenol mol-ecules. The mean planes of the 3-nitro-phenol mol-ecules are almost orthogonal to the plane of melamine, making dihedral angles of 82.77 (4) and 88.36 (5)°. In the crystal, mol-ecules are linked via O-H⋯N, N-H⋯N and N-H⋯O hydrogen bonds, forming a three-dimensional network. The crystal also features weak C-H⋯π and π-π inter-actions [centroid-centroid distance = 3.9823 (9) Å].

Entities:  

Year:  2013        PMID: 23795017      PMCID: PMC3684915          DOI: 10.1107/S1600536813011148

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to melamine derivatives, see: Desiraju et al. (1990 ▶); Krische & Lehn (2000 ▶). For related structures, see: Kanagathara et al. (2012 ▶); Wang et al. (2007 ▶).

Experimental

Crystal data

C3H6N6·2C6H5NO3 M = 404.36 Orthorhombic, a = 15.5150 (6) Å b = 12.9137 (6) Å c = 17.8323 (6) Å V = 3572.8 (2) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 295 K 0.28 × 0.24 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.967, T max = 0.977 19568 measured reflections 4447 independent reflections 3352 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.119 S = 1.03 4447 reflections 295 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813011148/bh2476sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813011148/bh2476Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813011148/bh2476Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H6N6·2C6H5NO3F(000) = 1680
Mr = 404.36Dx = 1.503 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 4327 reflections
a = 15.5150 (6) Åθ = 2.3–28.3°
b = 12.9137 (6) ŵ = 0.12 mm1
c = 17.8323 (6) ÅT = 295 K
V = 3572.8 (2) Å3Block, yellow
Z = 80.28 × 0.24 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer4447 independent reflections
Radiation source: fine-focus sealed tube3352 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −20→13
Tmin = 0.967, Tmax = 0.977k = −17→7
19568 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0577P)2 + 0.7906P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4447 reflectionsΔρmax = 0.24 e Å3
295 parametersΔρmin = −0.20 e Å3
8 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.0028 (5)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
C10.20295 (11)0.13223 (11)0.30457 (8)0.0472 (4)
C20.18602 (9)0.11918 (10)0.22906 (8)0.0406 (3)
H20.13050.10480.21230.049*
C30.25379 (9)0.12802 (10)0.17907 (8)0.0365 (3)
C40.33676 (9)0.14713 (12)0.20566 (9)0.0475 (4)
H40.38260.15210.17230.057*
C50.35064 (12)0.15871 (14)0.28162 (10)0.0597 (5)
H50.40620.17120.29890.072*
C60.28408 (13)0.15216 (13)0.33219 (9)0.0586 (5)
H60.29350.16090.38330.070*
C70.01234 (8)0.66741 (10)0.47227 (7)0.0337 (3)
C80.08123 (8)0.82016 (10)0.49038 (7)0.0337 (3)
C90.14073 (8)0.67001 (10)0.53192 (7)0.0322 (3)
C10−0.15540 (9)0.60489 (10)0.68536 (8)0.0383 (3)
C11−0.07322 (10)0.59736 (15)0.65597 (9)0.0546 (4)
H11−0.06430.58510.60520.066*
C12−0.00506 (10)0.60861 (16)0.70459 (10)0.0595 (5)
H120.05100.60400.68640.071*
C13−0.01848 (9)0.62665 (13)0.78025 (9)0.0464 (4)
H130.02830.63400.81240.056*
C14−0.10170 (8)0.63378 (10)0.80810 (8)0.0365 (3)
C15−0.17126 (8)0.62232 (10)0.76020 (8)0.0369 (3)
H15−0.22740.62630.77820.044*
N10.13017 (13)0.12490 (12)0.35762 (9)0.0659 (4)
N20.01376 (7)0.77043 (9)0.46051 (6)0.0361 (3)
N30.14703 (7)0.77395 (8)0.52606 (6)0.0354 (2)
N40.07430 (6)0.61329 (8)0.50739 (6)0.0345 (3)
N5−0.05479 (8)0.61359 (11)0.44621 (8)0.0461 (3)
N60.08276 (9)0.92415 (10)0.48582 (8)0.0457 (3)
N70.20470 (8)0.61983 (10)0.56654 (8)0.0445 (3)
N8−0.22955 (8)0.59341 (10)0.63461 (7)0.0459 (3)
O10.23651 (6)0.11610 (8)0.10455 (6)0.0433 (3)
O20.14494 (13)0.13811 (14)0.42402 (8)0.1006 (6)
O30.05950 (11)0.10386 (16)0.33363 (10)0.0968 (5)
O4−0.11865 (7)0.65065 (10)0.88192 (6)0.0537 (3)
O5−0.30194 (7)0.60094 (10)0.66114 (7)0.0583 (3)
O6−0.21580 (9)0.57499 (12)0.56836 (6)0.0716 (4)
H10.2744 (10)0.1481 (14)0.0807 (10)0.068 (6)*
H4A−0.0754 (9)0.6682 (15)0.9062 (9)0.064 (6)*
H6A0.0446 (9)0.9511 (14)0.4564 (9)0.065 (5)*
H6B0.1328 (8)0.9538 (13)0.4931 (10)0.061 (5)*
H7A0.2051 (10)0.5516 (7)0.5665 (9)0.048 (4)*
H7B0.2525 (8)0.6534 (12)0.5769 (9)0.050 (5)*
H5A−0.0593 (11)0.5475 (8)0.4593 (10)0.061 (5)*
H5B−0.1003 (8)0.6483 (13)0.4321 (10)0.058 (5)*
U11U22U33U12U13U23
C10.0631 (10)0.0362 (7)0.0423 (8)−0.0015 (7)0.0035 (7)0.0051 (6)
C20.0372 (7)0.0385 (7)0.0461 (7)−0.0032 (6)−0.0005 (6)0.0041 (6)
C30.0350 (7)0.0346 (6)0.0398 (7)−0.0048 (5)−0.0051 (5)0.0045 (5)
C40.0369 (8)0.0514 (8)0.0542 (8)−0.0108 (6)−0.0080 (7)0.0107 (7)
C50.0587 (10)0.0596 (10)0.0608 (10)−0.0195 (8)−0.0260 (9)0.0123 (8)
C60.0849 (13)0.0476 (9)0.0433 (8)−0.0136 (8)−0.0168 (9)0.0063 (7)
C70.0258 (6)0.0459 (7)0.0293 (6)0.0013 (5)−0.0018 (5)0.0003 (5)
C80.0298 (6)0.0419 (7)0.0295 (6)0.0021 (5)0.0051 (5)0.0018 (5)
C90.0252 (6)0.0416 (7)0.0300 (6)0.0001 (5)−0.0010 (5)0.0011 (5)
C100.0370 (7)0.0373 (6)0.0405 (7)−0.0007 (5)−0.0052 (6)0.0000 (5)
C110.0469 (9)0.0779 (11)0.0391 (7)0.0020 (8)0.0061 (7)−0.0013 (7)
C120.0330 (8)0.0935 (13)0.0520 (9)0.0002 (8)0.0107 (7)−0.0027 (9)
C130.0281 (7)0.0632 (9)0.0479 (8)−0.0024 (6)−0.0015 (6)−0.0034 (7)
C140.0300 (7)0.0396 (6)0.0399 (7)−0.0037 (5)0.0012 (5)−0.0049 (5)
C150.0271 (6)0.0389 (6)0.0447 (7)−0.0028 (5)0.0000 (5)−0.0056 (5)
N10.0904 (13)0.0530 (8)0.0543 (9)0.0022 (8)0.0230 (9)0.0047 (7)
N20.0293 (6)0.0447 (6)0.0342 (5)0.0039 (5)−0.0022 (4)0.0046 (4)
N30.0287 (5)0.0406 (6)0.0370 (6)−0.0036 (4)−0.0031 (4)0.0018 (4)
N40.0259 (5)0.0399 (6)0.0377 (6)0.0000 (4)−0.0052 (4)0.0012 (4)
N50.0306 (6)0.0515 (7)0.0561 (7)−0.0013 (6)−0.0156 (6)0.0033 (6)
N60.0431 (8)0.0406 (6)0.0535 (7)0.0022 (6)0.0009 (6)0.0055 (5)
N70.0294 (6)0.0457 (7)0.0585 (8)−0.0017 (5)−0.0150 (6)0.0062 (6)
N80.0481 (8)0.0436 (6)0.0460 (7)0.0003 (6)−0.0104 (6)−0.0007 (5)
O10.0350 (5)0.0563 (6)0.0386 (5)−0.0122 (5)−0.0010 (4)0.0022 (4)
O20.1446 (16)0.1092 (13)0.0480 (8)0.0043 (11)0.0257 (9)−0.0016 (8)
O30.0729 (10)0.1297 (15)0.0876 (11)−0.0121 (10)0.0340 (9)−0.0054 (10)
O40.0298 (5)0.0893 (8)0.0421 (6)−0.0117 (5)0.0014 (4)−0.0207 (5)
O50.0396 (6)0.0704 (8)0.0648 (7)0.0011 (5)−0.0132 (5)−0.0101 (6)
O60.0719 (9)0.1012 (10)0.0417 (6)0.0024 (8)−0.0125 (6)−0.0077 (6)
C1—C61.376 (2)C10—N81.4712 (18)
C1—C21.382 (2)C11—C121.375 (2)
C1—N11.476 (2)C11—H110.9300
C2—C31.383 (2)C12—C131.385 (2)
C2—H20.9300C12—H120.9300
C3—O11.3644 (16)C13—C141.3865 (19)
C3—C41.3938 (19)C13—H130.9300
C4—C51.380 (2)C14—O41.3599 (16)
C4—H40.9300C14—C151.3842 (18)
C5—C61.374 (3)C15—H150.9300
C5—H50.9300N1—O31.208 (2)
C6—H60.9300N1—O21.218 (2)
C7—N51.3356 (17)N5—H5A0.888 (9)
C7—N41.3434 (16)N5—H5B0.874 (9)
C7—N21.3469 (18)N6—H6A0.863 (9)
C8—N21.3385 (16)N6—H6B0.875 (9)
C8—N31.3429 (16)N7—H7A0.881 (9)
C8—N61.3456 (19)N7—H7B0.878 (9)
C9—N71.3364 (17)N8—O51.2226 (16)
C9—N41.3380 (16)N8—O61.2238 (17)
C9—N31.3498 (17)O1—H10.835 (9)
C10—C151.3756 (19)O4—H4A0.830 (9)
C10—C111.382 (2)
C6—C1—C2123.05 (15)C11—C12—C13121.09 (14)
C6—C1—N1118.84 (15)C11—C12—H12119.5
C2—C1—N1118.10 (15)C13—C12—H12119.5
C1—C2—C3118.25 (14)C12—C13—C14120.01 (14)
C1—C2—H2120.9C12—C13—H13120.0
C3—C2—H2120.9C14—C13—H13120.0
O1—C3—C2117.97 (12)O4—C14—C15117.63 (12)
O1—C3—C4122.19 (13)O4—C14—C13122.51 (12)
C2—C3—C4119.83 (13)C15—C14—C13119.86 (13)
C5—C4—C3119.82 (15)C10—C15—C14118.47 (12)
C5—C4—H4120.1C10—C15—H15120.8
C3—C4—H4120.1C14—C15—H15120.8
C6—C5—C4121.37 (15)O3—N1—O2123.13 (18)
C6—C5—H5119.3O3—N1—C1118.81 (16)
C4—C5—H5119.3O2—N1—C1118.04 (19)
C5—C6—C1117.66 (15)C8—N2—C7115.13 (11)
C5—C6—H6121.2C8—N3—C9115.05 (11)
C1—C6—H6121.2C9—N4—C7114.76 (11)
N5—C7—N4116.71 (12)C7—N5—H5A118.0 (12)
N5—C7—N2118.20 (12)C7—N5—H5B117.7 (12)
N4—C7—N2125.08 (11)H5A—N5—H5B120.4 (17)
N2—C8—N3124.74 (12)C8—N6—H6A115.2 (13)
N2—C8—N6117.95 (12)C8—N6—H6B116.3 (12)
N3—C8—N6117.30 (12)H6A—N6—H6B121.5 (19)
N7—C9—N4117.24 (12)C9—N7—H7A119.3 (11)
N7—C9—N3117.65 (12)C9—N7—H7B119.0 (11)
N4—C9—N3125.09 (11)H7A—N7—H7B119.2 (15)
C15—C10—C11122.99 (13)O5—N8—O6123.30 (13)
C15—C10—N8118.25 (12)O5—N8—C10118.19 (12)
C11—C10—N8118.76 (13)O6—N8—C10118.50 (13)
C12—C11—C10117.58 (14)C3—O1—H1107.5 (14)
C12—C11—H11121.2C14—O4—H4A113.1 (13)
C10—C11—H11121.2
C6—C1—C2—C3−0.9 (2)C6—C1—N1—O3−177.46 (17)
N1—C1—C2—C3178.75 (12)C2—C1—N1—O32.9 (2)
C1—C2—C3—O1−179.35 (12)C6—C1—N1—O20.8 (2)
C1—C2—C3—C41.5 (2)C2—C1—N1—O2−178.81 (16)
O1—C3—C4—C5179.91 (14)N3—C8—N2—C73.86 (18)
C2—C3—C4—C5−1.0 (2)N6—C8—N2—C7−174.73 (12)
C3—C4—C5—C6−0.2 (3)N5—C7—N2—C8177.70 (12)
C4—C5—C6—C10.8 (3)N4—C7—N2—C8−3.47 (18)
C2—C1—C6—C5−0.3 (2)N2—C8—N3—C9−1.28 (18)
N1—C1—C6—C5−179.92 (14)N6—C8—N3—C9177.32 (12)
C15—C10—C11—C12−0.4 (3)N7—C9—N3—C8179.61 (12)
N8—C10—C11—C12179.86 (15)N4—C9—N3—C8−2.16 (18)
C10—C11—C12—C130.1 (3)N7—C9—N4—C7−179.26 (12)
C11—C12—C13—C14−0.1 (3)N3—C9—N4—C72.50 (18)
C12—C13—C14—O4179.52 (15)N5—C7—N4—C9179.35 (12)
C12—C13—C14—C150.3 (2)N2—C7—N4—C90.50 (18)
C11—C10—C15—C140.6 (2)C15—C10—N8—O50.72 (19)
N8—C10—C15—C14−179.63 (12)C11—C10—N8—O5−179.50 (14)
O4—C14—C15—C10−179.81 (12)C15—C10—N8—O6−177.97 (14)
C13—C14—C15—C10−0.6 (2)C11—C10—N8—O61.8 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N3i0.84 (1)1.86 (1)2.6907 (14)176 (2)
O4—H4A···N2ii0.83 (1)1.87 (1)2.6876 (14)170 (2)
N5—H5A···N4iii0.89 (1)2.17 (1)3.0594 (18)178 (17)
N5—H5B···O1iv0.87 (1)2.25 (1)2.9613 (16)138 (15)
N7—H7A···O1v0.88 (1)2.32 (1)3.1600 (17)159 (14)
N7—H7B···O4vi0.88 (1)2.13 (1)2.9180 (16)149 (15)
C6—H6···Cg3vii0.932.953.7504 (18)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the melamine tri­amine ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N3i 0.84 (1)1.86 (1)2.6907 (14)176 (2)
O4—H4A⋯N2ii 0.83 (1)1.87 (1)2.6876 (14)170 (2)
N5—H5A⋯N4iii 0.89 (1)2.17 (1)3.0594 (18)178 (17)
N5—H5B⋯O1iv 0.87 (1)2.25 (1)2.9613 (16)138 (15)
N7—H7A⋯O1v 0.88 (1)2.32 (1)3.1600 (17)159 (14)
N7—H7B⋯O4vi 0.88 (1)2.13 (1)2.9180 (16)149 (15)
C6—H6⋯Cg3vii 0.932.953.7504 (18)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Nitro-phenol-2,4,6-triamino-1,3,5-triazine-water (2/1/1).

Authors:  N Kanagathara; G Chakkaravarthi; M K Marchewka; S Gunasekaran; G Anbalagan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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