Literature DB >> 23794048

Specific primer design for the polymerase chain reaction.

Li-Yeh Chuang1, Yu-Huei Cheng, Cheng-Hong Yang.   

Abstract

The design of primers has a major impact on the success of PCR in relation to the specificity and yield of the amplified product. Here, we introduce the applications of PCR as well as the definition and characteristics for PCR primer design. Recent primer design tools based on Primer3, along with several computational intelligence-based primer design methods which have been applied in primer design, are also reviewed. In addition, characteristics of population-based methods used in primer design are discussed in detail.

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Year:  2013        PMID: 23794048     DOI: 10.1007/s10529-013-1249-8

Source DB:  PubMed          Journal:  Biotechnol Lett        ISSN: 0141-5492            Impact factor:   2.461


  13 in total

1.  Molecular Biology Methods in Streptomyces rimosus, a Producer of Oxytetracycline.

Authors:  Lucija Slemc; Špela Pikl; Hrvoje Petković; Martina Avbelj
Journal:  Methods Mol Biol       Date:  2021

2.  Constitutive and Inducible Systems for Genetic In Vivo Modification of Mouse Hepatocytes Using Hydrodynamic Tail Vein Injection.

Authors:  Eric K Hubner; Christian Lechler; Thomas N Rösner; Birgit Kohnke-Ertel; Roland M Schmid; Ursula Ehmer
Journal:  J Vis Exp       Date:  2018-02-02       Impact factor: 1.355

3.  Primer Designing for Amplifying an AT-Rich Promoter from Arabidopsis thaliana.

Authors:  Pinky Dhatterwal; Sandhya Mehrotra; Rajesh Mehrotra
Journal:  Methods Mol Biol       Date:  2022

4.  MRPrimer: a MapReduce-based method for the thorough design of valid and ranked primers for PCR.

Authors:  Hyerin Kim; NaNa Kang; Kang-Wook Chon; Seonho Kim; NaHye Lee; JaeHyung Koo; Min-Soo Kim
Journal:  Nucleic Acids Res       Date:  2015-06-24       Impact factor: 16.971

5.  MRPrimerW: a tool for rapid design of valid high-quality primers for multiple target qPCR experiments.

Authors:  Hyerin Kim; NaNa Kang; KyuHyeon An; JaeHyung Koo; Min-Soo Kim
Journal:  Nucleic Acids Res       Date:  2016-05-06       Impact factor: 16.971

Review 6.  Primer design for quantitative real-time PCR for the emerging Coronavirus SARS-CoV-2.

Authors:  Dandan Li; Jiawei Zhang; Jinming Li
Journal:  Theranostics       Date:  2020-06-01       Impact factor: 11.556

7.  A Toxicity Screening Approach to Identify Bacteriophage-Encoded Anti-Microbial Proteins.

Authors:  Ushanandini Mohanraj; Xing Wan; Cindy M Spruit; Mikael Skurnik; Maria I Pajunen
Journal:  Viruses       Date:  2019-11-14       Impact factor: 5.048

Review 8.  The New Coronavirus (SARS-CoV-2): A Comprehensive Review on Immunity and the Application of Bioinformatics and Molecular Modeling to the Discovery of Potential Anti-SARS-CoV-2 Agents.

Authors:  Gustavo R Villas-Boas; Vanessa C Rescia; Marina M Paes; Stefânia N Lavorato; Manoel F de Magalhães-Filho; Mila S Cunha; Rafael da C Simões; Roseli B de Lacerda; Renilson S de Freitas-Júnior; Bruno H da S Ramos; Ana M Mapeli; Matheus da S T Henriques; William R de Freitas; Luiz A F Lopes; Luiz G R Oliveira; Jonatas G da Silva; Saulo E Silva-Filho; Ana P S da Silveira; Katyuscya V Leão; Maria M de S Matos; Jamille S Fernandes; Roberto K N Cuman; Francielli M de S Silva-Comar; Jurandir F Comar; Luana do A Brasileiro; Jussileide N Dos Santos; Silvia A Oesterreich
Journal:  Molecules       Date:  2020-09-07       Impact factor: 4.411

9.  PhyloPrimer: a taxon-specific oligonucleotide design platform.

Authors:  Gilda Varliero; Jared Wray; Cédric Malandain; Gary Barker
Journal:  PeerJ       Date:  2021-04-29       Impact factor: 2.984

10.  An Amplicon-Based Approach for the Whole-Genome Sequencing of Human Metapneumovirus.

Authors:  Rachel L Tulloch; Jen Kok; Ian Carter; Dominic E Dwyer; John-Sebastian Eden
Journal:  Viruses       Date:  2021-03-18       Impact factor: 5.048

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