Literature DB >> 23793601

Providing access to risk prediction tools via the HL7 XML-formatted risk web service.

Jonathan Chipman1, Brian Drohan, Amanda Blackford, Giovanni Parmigiani, Kevin Hughes, Phil Bosinoff.   

Abstract

Cancer risk prediction tools provide valuable information to clinicians but remain computationally challenging. Many clinics find that CaGene or HughesRiskApps fit their needs for easy- and ready-to-use software to obtain cancer risks; however, these resources may not fit all clinics' needs. The HughesRiskApps Group and BayesMendel Lab therefore developed a web service, called "Risk Service", which may be integrated into any client software to quickly obtain standardized and up-to-date risk predictions for BayesMendel tools (BRCAPRO, MMRpro, PancPRO, and MelaPRO), the Tyrer-Cuzick IBIS Breast Cancer Risk Evaluation Tool, and the Colorectal Cancer Risk Assessment Tool. Software clients that can convert their local structured data into the HL7 XML-formatted family and clinical patient history (Pedigree model) may integrate with the Risk Service. The Risk Service uses Apache Tomcat and Apache Axis2 technologies to provide an all Java web service. The software client sends HL7 XML information containing anonymized family and clinical history to a Dana-Farber Cancer Institute (DFCI) server, where it is parsed, interpreted, and processed by multiple risk tools. The Risk Service then formats the results into an HL7 style message and returns the risk predictions to the originating software client. Upon consent, users may allow DFCI to maintain the data for future research. The Risk Service implementation is exemplified through HughesRiskApps. The Risk Service broadens the availability of valuable, up-to-date cancer risk tools and allows clinics and researchers to integrate risk prediction tools into their own software interface designed for their needs. Each software package can collect risk data using its own interface, and display the results using its own interface, while using a central, up-to-date risk calculator. This allows users to choose from multiple interfaces while always getting the latest risk calculations. Consenting users contribute their data for future research, thus building a rich multicenter resource.

Entities:  

Mesh:

Year:  2013        PMID: 23793601      PMCID: PMC3760685          DOI: 10.1007/s10549-013-2605-z

Source DB:  PubMed          Journal:  Breast Cancer Res Treat        ISSN: 0167-6806            Impact factor:   4.872


  19 in total

1.  Assessing the added value of breast tumor markers in genetic risk prediction model BRCAPRO.

Authors:  Swati Biswas; Neelam Tankhiwale; Amanda Blackford; Angelica M Gutierrez Barrera; Kaylene Ready; Karen Lu; Christopher I Amos; Giovanni Parmigiani; Banu Arun
Journal:  Breast Cancer Res Treat       Date:  2012-01-21       Impact factor: 4.872

2.  Determining carrier probabilities for breast cancer-susceptibility genes BRCA1 and BRCA2.

Authors:  G Parmigiani; D Berry; O Aguilar
Journal:  Am J Hum Genet       Date:  1998-01       Impact factor: 11.025

3.  Prediction of germline mutations and cancer risk in the Lynch syndrome.

Authors:  Sining Chen; Wenyi Wang; Shing Lee; Khedoudja Nafa; Johanna Lee; Kathy Romans; Patrice Watson; Stephen B Gruber; David Euhus; Kenneth W Kinzler; Jeremy Jass; Steven Gallinger; Noralane M Lindor; Graham Casey; Nathan Ellis; Francis M Giardiello; Kenneth Offit; Giovanni Parmigiani
Journal:  JAMA       Date:  2006-09-27       Impact factor: 56.272

4.  Tailoring BRCAPRO to Asian-Americans.

Authors:  Sining Chen; Amanda L Blackford; Giovanni Parmigiani
Journal:  J Clin Oncol       Date:  2008-12-15       Impact factor: 44.544

5.  Identification and management of women at high risk for hereditary breast/ovarian cancer syndrome.

Authors:  Elissa M Ozanne; Andrea Loberg; Sherwood Hughes; Christine Lawrence; Brian Drohan; Alan Semine; Michael Jellinek; Claire Cronin; Frederick Milham; Dana Dowd; Caroline Block; Deborah Lockhart; John Sharko; Georges Grinstein; Kevin S Hughes
Journal:  Breast J       Date:  2009 Mar-Apr       Impact factor: 2.431

6.  Multiple diseases in carrier probability estimation: accounting for surviving all cancers other than breast and ovary in BRCAPRO.

Authors:  Hormuzd A Katki; Amanda Blackford; Sining Chen; Giovanni Parmigiani
Journal:  Stat Med       Date:  2008-09-30       Impact factor: 2.373

7.  Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO.

Authors:  Wenyi Wang; Kristin B Niendorf; Devanshi Patel; Amanda Blackford; Fabio Marroni; Arthur J Sober; Giovanni Parmigiani; Hensin Tsao
Journal:  Cancer Res       Date:  2010-01-12       Impact factor: 12.701

8.  Validity of models for predicting BRCA1 and BRCA2 mutations.

Authors:  Giovanni Parmigiani; Sining Chen; Edwin S Iversen; Tara M Friebel; Dianne M Finkelstein; Hoda Anton-Culver; Argyrios Ziogas; Barbara L Weber; Andrea Eisen; Kathleen E Malone; Janet R Daling; Li Hsu; Elaine A Ostrander; Leif E Peterson; Joellen M Schildkraut; Claudine Isaacs; Camille Corio; Leoni Leondaridis; Gail Tomlinson; Christopher I Amos; Louise C Strong; Donald A Berry; Jeffrey N Weitzel; Sharon Sand; Debra Dutson; Rich Kerber; Beth N Peshkin; David M Euhus
Journal:  Ann Intern Med       Date:  2007-10-02       Impact factor: 25.391

9.  Meta-analysis of BRCA1 and BRCA2 penetrance.

Authors:  Sining Chen; Giovanni Parmigiani
Journal:  J Clin Oncol       Date:  2007-04-10       Impact factor: 44.544

10.  Incorporating medical interventions into carrier probability estimation for genetic counseling.

Authors:  Hormuzd A Katki
Journal:  BMC Med Genet       Date:  2007-03-22       Impact factor: 2.103

View more
  6 in total

Review 1.  Review and Comparison of Electronic Patient-Facing Family Health History Tools.

Authors:  Brandon M Welch; Kevin Wiley; Lance Pflieger; Rosaline Achiangia; Karen Baker; Chanita Hughes-Halbert; Heath Morrison; Joshua Schiffman; Megan Doerr
Journal:  J Genet Couns       Date:  2018-03-06       Impact factor: 2.537

2.  Recent BRCAPRO upgrades significantly improve calibration.

Authors:  Emanuele Mazzola; Jonathan Chipman; Su-Chun Cheng; Giovanni Parmigiani
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-06-02       Impact factor: 4.254

Review 3.  Assessing Risk of Breast Cancer: A Review of Risk Prediction Models.

Authors:  Geunwon Kim; Manisha Bahl
Journal:  J Breast Imaging       Date:  2021-02-19

Review 4.  Recent Enhancements to the Genetic Risk Prediction Model BRCAPRO.

Authors:  Emanuele Mazzola; Amanda Blackford; Giovanni Parmigiani; Swati Biswas
Journal:  Cancer Inform       Date:  2015-05-10

5.  Utilization of health information technology among cancer genetic counselors.

Authors:  Jordon B Ritchie; Caitlin G Allen; Heath Morrison; Michelle Nichols; Steven D Lauzon; Joshua D Schiffman; Chanita Hughes Halbert; Brandon M Welch
Journal:  Mol Genet Genomic Med       Date:  2020-05-28       Impact factor: 2.183

6.  Implementation of a scalable, web-based, automated clinical decision support risk-prediction tool for chronic kidney disease using C-CDA and application programming interfaces.

Authors:  Lipika Samal; John D D'Amore; David W Bates; Adam Wright
Journal:  J Am Med Inform Assoc       Date:  2017-11-01       Impact factor: 4.497

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.