Literature DB >> 23784721

Protein folding and unfolding under force.

Bharat Jagannathan1, Susan Marqusee.   

Abstract

The recent revolution in optics and instrumentation has enabled the study of protein folding using extremely low mechanical forces as the denaturant. This exciting development has led to the observation of the protein folding process at single molecule resolution and its response to mechanical force. Here, we describe the principles and experimental details of force spectroscopy on proteins, with a focus on the optical tweezers instrument. Several recent results will be discussed to highlight the importance of this technique in addressing a variety of questions in the protein folding field.
Copyright © 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  force spectroscopy; optical tweezers; protein folding

Mesh:

Substances:

Year:  2013        PMID: 23784721      PMCID: PMC4065244          DOI: 10.1002/bip.22321

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  52 in total

1.  Optical-trap force transducer that operates by direct measurement of light momentum.

Authors:  Steven B Smith; Yujia Cui; Carlos Bustamante
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

2.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

Review 3.  The effect of force on thermodynamics and kinetics: unfolding single RNA molecules.

Authors:  I Tinoco; D Collin; P T X Li
Journal:  Biochem Soc Trans       Date:  2004-11       Impact factor: 5.407

4.  Intrinsic rates and activation free energies from single-molecule pulling experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Phys Rev Lett       Date:  2006-03-15       Impact factor: 9.161

5.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

6.  The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules detected under native conditions.

Authors:  T M Raschke; S Marqusee
Journal:  Nat Struct Biol       Date:  1997-04

Review 7.  Intermediates in the folding reactions of small proteins.

Authors:  P S Kim; R L Baldwin
Journal:  Annu Rev Biochem       Date:  1990       Impact factor: 23.643

8.  Subdomain interactions as a determinant in the folding and stability of T4 lysozyme.

Authors:  M Llinás; S Marqusee
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

9.  The folding cooperativity of a protein is controlled by its chain topology.

Authors:  Elizabeth A Shank; Ciro Cecconi; Jesse W Dill; Susan Marqusee; Carlos Bustamante
Journal:  Nature       Date:  2010-05-23       Impact factor: 49.962

10.  ClpX(P) generates mechanical force to unfold and translocate its protein substrates.

Authors:  Rodrigo A Maillard; Gheorghe Chistol; Maya Sen; Maurizio Righini; Jiongyi Tan; Christian M Kaiser; Courtney Hodges; Andreas Martin; Carlos Bustamante
Journal:  Cell       Date:  2011-04-29       Impact factor: 41.582

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  16 in total

Review 1.  Understanding biochemical processes in the presence of sub-diffusive behavior of biomolecules in solution and living cells.

Authors:  Sujit Basak; Sombuddha Sengupta; Krishnananda Chattopadhyay
Journal:  Biophys Rev       Date:  2019-08-23

2.  A small single-domain protein folds through the same pathway on and off the ribosome.

Authors:  Emily J Guinn; Pengfei Tian; Mia Shin; Robert B Best; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-08       Impact factor: 11.205

Review 3.  Lessons from pressure denaturation of proteins.

Authors:  Julien Roche; Catherine A Royer
Journal:  J R Soc Interface       Date:  2018-10-03       Impact factor: 4.118

4.  Propensity to form amyloid fibrils is encoded as excitations in the free energy landscape of monomeric proteins.

Authors:  Pavel I Zhuravlev; Govardhan Reddy; John E Straub; D Thirumalai
Journal:  J Mol Biol       Date:  2014-05-17       Impact factor: 5.469

5.  Single-Molecule Chemo-Mechanical Spectroscopy Provides Structural Identity of Folding Intermediates.

Authors:  Hesam N Motlagh; Dmitri Toptygin; Christian M Kaiser; Vincent J Hilser
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

6.  Exploring the Denatured State Ensemble by Single-Molecule Chemo-Mechanical Unfolding: The Effect of Force, Temperature, and Urea.

Authors:  Emily J Guinn; Susan Marqusee
Journal:  J Mol Biol       Date:  2017-08-04       Impact factor: 5.469

7.  Mechanochemical Disruption Suppresses Metastatic Phenotype and Pushes Prostate Cancer Cells toward Apoptosis.

Authors:  Hakm Y Murad; Heng Yu; Daishen Luo; Emma P Bortz; Gray M Halliburton; Andrew B Sholl; Damir B Khismatullin
Journal:  Mol Cancer Res       Date:  2019-01-07       Impact factor: 5.852

8.  Unraveling the Mechanics of a Repeat-Protein Nanospring: From Folding of Individual Repeats to Fluctuations of the Superhelix.

Authors:  Marie Synakewicz; Rohan S Eapen; Albert Perez-Riba; Pamela J E Rowling; Daniela Bauer; Andreas Weißl; Gerhard Fischer; Marko Hyvönen; Matthias Rief; Laura S Itzhaki; Johannes Stigler
Journal:  ACS Nano       Date:  2022-03-08       Impact factor: 15.881

9.  Proteins Breaking Bad: A Free Energy Perspective.

Authors:  Jessica Valle-Orero; Rafael Tapia-Rojo; Edward C Eckels; Jaime Andrés Rivas-Pardo; Ionel Popa; Julio M Fernández
Journal:  J Phys Chem Lett       Date:  2017-07-25       Impact factor: 6.475

10.  Single-molecule chemo-mechanical unfolding reveals multiple transition state barriers in a small single-domain protein.

Authors:  Emily J Guinn; Bharat Jagannathan; Susan Marqusee
Journal:  Nat Commun       Date:  2015-04-17       Impact factor: 14.919

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