Literature DB >> 23780345

A structural modeling approach for the understanding of initiation and elongation of ALS-linked superoxide dismutase fibrils.

Mattia Falconi1, Federico Iacovelli, Alessandro Desideri.   

Abstract

Familial amyotrophic lateral sclerosis caused by mutations in copper-zinc superoxide dismutase (SOD1) is characterized by the presence of SOD1-rich inclusions in spinal cords. It has been shown that a reduced intra-subunit disulfide bridge apo-SOD1 can rapidly initiate fibrillation forming an inter-subunits disulfide under mild, physiologically accessible conditions. Once initiated, elongation can proceed via recruitment of either apo or partially metallated disulfide-intact SOD1 and the presence of copper, but not zinc, ions inhibit fibrillation. We propose a structural model, refined through molecular dynamics simulations, that, taking into account these experimental findings, provides a molecular explanation for the initiation and the elongation of SOD1 fibrils in physiological conditions. The model indicates the occurrence of a new dimeric unit, prone to interact one with the other due to the presence of a wide hydrophobic surface and specific electrostatic interactions. The model has dimensions consistent with the SOD1 fibril size observed through electron microscopy and provides a structural basis for the understanding of SOD1 fibrillation.

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Year:  2013        PMID: 23780345     DOI: 10.1007/s00894-013-1896-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  38 in total

1.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

2.  Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport.

Authors:  Mattia Falconi; Francesco Oteri; Francesco Di Palma; Saurabh Pandey; Andrea Battistoni; Alessandro Desideri
Journal:  J Comput Aided Mol Des       Date:  2011-01-15       Impact factor: 3.686

3.  Local unfolding of Cu, Zn superoxide dismutase monomer determines the morphology of fibrillar aggregates.

Authors:  Feng Ding; Yoshiaki Furukawa; Nobuyuki Nukina; Nikolay V Dokholyan
Journal:  J Mol Biol       Date:  2011-12-21       Impact factor: 5.469

4.  Familial amyotrophic lateral sclerosis mutants of copper/zinc superoxide dismutase are susceptible to disulfide reduction.

Authors:  Ashutosh Tiwari; Lawrence J Hayward
Journal:  J Biol Chem       Date:  2002-11-27       Impact factor: 5.157

5.  The structure of holo and metal-deficient wild-type human Cu, Zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis.

Authors:  Richard W Strange; Svetlana Antonyuk; Michael A Hough; Peter A Doucette; Jorge A Rodriguez; P John Hart; Lawrence J Hayward; Joan S Valentine; S Samar Hasnain
Journal:  J Mol Biol       Date:  2003-05-09       Impact factor: 5.469

6.  Amyotrophic lateral sclerosis and structural defects in Cu,Zn superoxide dismutase.

Authors:  H X Deng; A Hentati; J A Tainer; Z Iqbal; A Cayabyab; W Y Hung; E D Getzoff; P Hu; B Herzfeldt; R P Roos
Journal:  Science       Date:  1993-08-20       Impact factor: 47.728

7.  ALS mutants of human superoxide dismutase form fibrous aggregates via framework destabilization.

Authors:  Michael DiDonato; Lisa Craig; Mary E Huff; Maria M Thayer; Rosa M F Cardoso; Carey J Kassmann; Terence P Lo; Cami K Bruns; Evan T Powers; Jeffery W Kelly; Elizabeth D Getzoff; John A Tainer
Journal:  J Mol Biol       Date:  2003-09-19       Impact factor: 5.469

8.  Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis.

Authors:  D R Rosen; T Siddique; D Patterson; D A Figlewicz; P Sapp; A Hentati; D Donaldson; J Goto; J P O'Regan; H X Deng
Journal:  Nature       Date:  1993-03-04       Impact factor: 49.962

9.  Natural history of amyotrophic lateral sclerosis in a database population. Validation of a scoring system and a model for survival prediction.

Authors:  L J Haverkamp; V Appel; S H Appel
Journal:  Brain       Date:  1995-06       Impact factor: 13.501

10.  Initiation and elongation in fibrillation of ALS-linked superoxide dismutase.

Authors:  Madhuri Chattopadhyay; Armando Durazo; Se Hui Sohn; Cynthia D Strong; Edith B Gralla; Julian P Whitelegge; Joan Selverstone Valentine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-20       Impact factor: 11.205

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  2 in total

1.  The Effect of (-)-Epigallo-catechin-(3)-gallate on Amyloidogenic Proteins Suggests a Common Mechanism.

Authors:  Kathrin Andrich; Jan Bieschke
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

2.  Calculations of hyperfine coupling constant of copper(II) in aqueous environment. Finite temperature molecular dynamics and relativistic effects.

Authors:  Michal Malček; Lukáš Bučinský; Marián Valko; Stanislav Biskupič
Journal:  J Mol Model       Date:  2015-08-18       Impact factor: 1.810

  2 in total

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