Literature DB >> 23779148

Successful combination of computationally inexpensive GIAO 13C NMR calculations and artificial neural network pattern recognition: a new strategy for simple and rapid detection of structural misassignments.

Ariel M Sarotti1.   

Abstract

GIAO NMR chemical shift calculations coupled with trained artificial neural networks (ANNs) have been shown to provide a powerful strategy for simple, rapid and reliable identification of structural misassignments of organic compounds using only one set of both computational and experimental data. The geometry optimization, usually the most time-consuming step in the overall procedure, was carried out using computationally inexpensive methods (MM+, AM1 or HF/3-21G) and the NMR shielding constants at the affordable mPW1PW91/6-31G(d) level of theory. As low quality NMR prediction is typically obtained with such protocols, the decision making was foreseen as a problem of pattern recognition. Thus, given a set of statistical parameters computed after correlation between experimental and calculated chemical shifts the classification was done using the knowledge derived from trained ANNs. The training process was carried out with a set of 200 molecules chosen to provide a wide array of chemical functionalities and molecular complexity, and the results were validated with a set of 26 natural products that had been incorrectly assigned along with their 26 revised structures. The high prediction effectiveness observed makes this method a suitable test for rapid identification of structural misassignments, preventing not only the publication of wrong structures but also avoiding the consequences of such a mistake.

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Year:  2013        PMID: 23779148     DOI: 10.1039/c3ob40843d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  10 in total

1.  Analysis of seven-membered lactones by computational NMR methods: proton NMR chemical shift data are more discriminating than carbon.

Authors:  Daniel J Marell; Susanna J Emond; Aman Kulshrestha; Thomas R Hoye
Journal:  J Org Chem       Date:  2014-01-06       Impact factor: 4.354

2.  Unequivocal determination of complex molecular structures using anisotropic NMR measurements.

Authors:  Yizhou Liu; Josep Saurí; Emily Mevers; Mark W Peczuh; Henk Hiemstra; Jon Clardy; Gary E Martin; R Thomas Williamson
Journal:  Science       Date:  2017-04-07       Impact factor: 47.728

Review 3.  Approaches to Configuration Determinations of Flexible Marine Natural Products: Advances and Prospects.

Authors:  Zong-Qing Huo; Feng Zhu; Xing-Wang Zhang; Xiao Zhang; Hong-Bao Liang; Jing-Chun Yao; Zhong Liu; Gui-Min Zhang; Qing-Qiang Yao; Guo-Fei Qin
Journal:  Mar Drugs       Date:  2022-05-19       Impact factor: 6.085

4.  A guide to small-molecule structure assignment through computation of (¹H and ¹³C) NMR chemical shifts.

Authors:  Patrick H Willoughby; Matthew J Jansma; Thomas R Hoye
Journal:  Nat Protoc       Date:  2014-02-20       Impact factor: 13.491

5.  Application of back-propagation artificial neural network and curve estimation in pharmacokinetics of losartan in rabbit.

Authors:  Bin Lin; Gaotong Lin; Xianyun Liu; Jianshe Ma; Xianchuan Wang; Feiyan Lin; Lufeng Hu
Journal:  Int J Clin Exp Med       Date:  2015-12-15

6.  Computational NMR Spectroscopy of Ionic Liquids: [C4C1im]Cl/Water Mixtures.

Authors:  Giacomo Saielli
Journal:  Molecules       Date:  2020-04-29       Impact factor: 4.411

Review 7.  Computationally-assisted discovery and structure elucidation of natural products.

Authors:  Alfarius Eko Nugroho; Hiroshi Morita
Journal:  J Nat Med       Date:  2019-05-15       Impact factor: 2.343

8.  The DP5 probability, quantification and visualisation of structural uncertainty in single molecules.

Authors:  Alexander Howarth; Jonathan M Goodman
Journal:  Chem Sci       Date:  2022-02-25       Impact factor: 9.825

9.  Essential parameters for structural analysis and dereplication by (1)H NMR spectroscopy.

Authors:  Guido F Pauli; Shao-Nong Chen; David C Lankin; Jonathan Bisson; Ryan J Case; Lucas R Chadwick; Tanja Gödecke; Taichi Inui; Aleksej Krunic; Birgit U Jaki; James B McAlpine; Shunyan Mo; José G Napolitano; Jimmy Orjala; Juuso Lehtivarjo; Samuli-Petrus Korhonen; Matthias Niemitz
Journal:  J Nat Prod       Date:  2014-06-04       Impact factor: 4.050

10.  An automated framework for NMR chemical shift calculations of small organic molecules.

Authors:  Yasemin Yesiltepe; Jamie R Nuñez; Sean M Colby; Dennis G Thomas; Mark I Borkum; Patrick N Reardon; Nancy M Washton; Thomas O Metz; Justin G Teeguarden; Niranjan Govind; Ryan S Renslow
Journal:  J Cheminform       Date:  2018-10-26       Impact factor: 5.514

  10 in total

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