Literature DB >> 28385960

Unequivocal determination of complex molecular structures using anisotropic NMR measurements.

Yizhou Liu1, Josep Saurí2, Emily Mevers3, Mark W Peczuh4, Henk Hiemstra5, Jon Clardy3, Gary E Martin6, R Thomas Williamson6.   

Abstract

Assignment of complex molecular structures from nuclear magnetic resonance (NMR) data can be prone to interpretational mistakes. Residual dipolar couplings and residual chemical shift anisotropy provide a spatial view of the relative orientations between bonds and chemical shielding tensors, respectively, regardless of separation. Consequently, these data constitute a reliable reporter of global structural validity. Anisotropic NMR parameters can be used to evaluate investigators' structure proposals or structures generated by computer-assisted structure elucidation. Application of the method to several complex structure assignment problems shows promising results that signal a potential paradigm shift from conventional NMR data interpretation, which may be of particular utility for compounds not amenable to x-ray crystallography.
Copyright © 2017, American Association for the Advancement of Science.

Entities:  

Year:  2017        PMID: 28385960      PMCID: PMC6596297          DOI: 10.1126/science.aam5349

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  36 in total

Review 1.  Weak alignment offers new NMR opportunities to study protein structure and dynamics.

Authors:  Ad Bax
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

2.  More accurate 1J(CH) coupling measurement in the presence of 3J(HH) strong coupling in natural abundance.

Authors:  Bingwu Yu; Hugo van Ingen; Subramanian Vivekanandan; Christoph Rademacher; Scott E Norris; Darón I Freedberg
Journal:  J Magn Reson       Date:  2011-09-22       Impact factor: 2.229

3.  Organic structure determination using atomic-resolution scanning probe microscopy.

Authors:  Leo Gross; Fabian Mohn; Nikolaj Moll; Gerhard Meyer; Rainer Ebel; Wael M Abdel-Mageed; Marcel Jaspars
Journal:  Nat Chem       Date:  2010-08-01       Impact factor: 24.427

4.  A device for the measurement of residual chemical shift anisotropy and residual dipolar coupling in soluble and membrane-associated proteins.

Authors:  Yizhou Liu; James H Prestegard
Journal:  J Biomol NMR       Date:  2010-05-27       Impact factor: 2.835

5.  Residual dipolar couplings of freely rotating groups in small molecules. Stereochemical assignment and side-chain conformation of 8-phenylmenthol.

Authors:  Víctor M Sánchez-Pedregal; Raquel Santamaría-Fernández; Armando Navarro-Vázquez
Journal:  Org Lett       Date:  2009-04-02       Impact factor: 6.005

6.  The chemical structure of a molecule resolved by atomic force microscopy.

Authors:  Leo Gross; Fabian Mohn; Nikolaj Moll; Peter Liljeroth; Gerhard Meyer
Journal:  Science       Date:  2009-08-28       Impact factor: 47.728

7.  The CLIP/CLAP-HSQC: pure absorptive spectra for the measurement of one-bond couplings.

Authors:  Andreas Enthart; J Christoph Freudenberger; Julien Furrer; Horst Kessler; Burkhard Luy
Journal:  J Magn Reson       Date:  2008-03-21       Impact factor: 2.229

8.  Residual chemical shift anisotropy (RCSA): a tool for the analysis of the configuration of small molecules.

Authors:  Fernando Hallwass; Manuel Schmidt; Han Sun; Adam Mazur; Grit Kummerlöwe; Burkhard Luy; Armando Navarro-Vázquez; Christian Griesinger; Uwe M Reinscheid
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-13       Impact factor: 15.336

9.  Variable angle NMR spectroscopy and its application to the measurement of residual chemical shift anisotropy.

Authors:  Grit Kummerlöwe; Stephan L Grage; Christina M Thiele; Ilya Kuprov; Anne S Ulrich; Burkhard Luy
Journal:  J Magn Reson       Date:  2010-12-16       Impact factor: 2.229

10.  De novo protein structure generation from incomplete chemical shift assignments.

Authors:  Yang Shen; Robert Vernon; David Baker; Ad Bax
Journal:  J Biomol NMR       Date:  2008-11-26       Impact factor: 2.835

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  20 in total

1.  Synergism of anisotropic and computational NMR methods reveals the likely configuration of phormidolide A.

Authors:  Ikenna E Ndukwe; Xiao Wang; Nelson Y S Lam; Kristaps Ermanis; Kelsey L Alexander; Matthew J Bertin; Gary E Martin; Garrett Muir; Ian Paterson; Robert Britton; Jonathan M Goodman; Eric J N Helfrich; Jörn Piel; William H Gerwick; R Thomas Williamson
Journal:  Chem Commun (Camb)       Date:  2020-07-09       Impact factor: 6.222

Review 2.  Recent trends in the structural revision of natural products.

Authors:  Bhuwan Khatri Chhetri; Serge Lavoie; Anne Marie Sweeney-Jones; Julia Kubanek
Journal:  Nat Prod Rep       Date:  2018-06-20       Impact factor: 13.423

3.  The natural productome.

Authors:  Andrea M E Palazzolo; Claire L W Simons; Martin D Burke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

4.  Synthesis and shift-reagent-assisted full NMR assignment of bacterial (Z8,E2,ω)-undecaprenol.

Authors:  Mijoon Lee; Dusan Hesek; Jaroslav Zajíček; Jed F Fisher; Shahriar Mobashery
Journal:  Chem Commun (Camb)       Date:  2017-11-28       Impact factor: 6.222

5.  Characterization by Empirical and Computational Methods of Dictyospiromide, an Intriguing Antioxidant Alkaloid from the Marine Alga Dictyota coriacea.

Authors:  Pengcheng Yan; Ge Li; Chaojie Wang; Jianzhang Wu; Zhongmin Sun; Gary E Martin; Xiao Wang; Mikhail Reibarkh; Josep Saurí; Kirk R Gustafson
Journal:  Org Lett       Date:  2019-09-06       Impact factor: 6.005

Review 6.  Ethnobotany and the Role of Plant Natural Products in Antibiotic Drug Discovery.

Authors:  Gina Porras; François Chassagne; James T Lyles; Lewis Marquez; Micah Dettweiler; Akram M Salam; Tharanga Samarakoon; Sarah Shabih; Darya Raschid Farrokhi; Cassandra L Quave
Journal:  Chem Rev       Date:  2020-11-09       Impact factor: 60.622

Review 7.  Computationally-assisted discovery and structure elucidation of natural products.

Authors:  Alfarius Eko Nugroho; Hiroshi Morita
Journal:  J Nat Med       Date:  2019-05-15       Impact factor: 2.343

8.  Unequivocal determination of caulamidines A and B: application and validation of new tools in the structure elucidation tool box.

Authors:  Dennis J Milanowski; Naoya Oku; Laura K Cartner; Heidi R Bokesch; R Thomas Williamson; Josep Saurí; Yizhou Liu; Kirill A Blinov; Yuanqing Ding; Xing-Cong Li; Daneel Ferreira; Larry A Walker; Shabana Khan; Michael T Davies-Coleman; James A Kelley; James B McMahon; Gary E Martin; Kirk R Gustafson
Journal:  Chem Sci       Date:  2017-11-06       Impact factor: 9.825

Review 9.  Computational Methodologies in the Exploration of Marine Natural Product Leads.

Authors:  Florbela Pereira; Joao Aires-de-Sousa
Journal:  Mar Drugs       Date:  2018-07-13       Impact factor: 5.118

10.  Complex macrocycle exploration: parallel, heuristic, and constraint-based conformer generation using ForceGen.

Authors:  Ajay N Jain; Ann E Cleves; Qi Gao; Xiao Wang; Yizhou Liu; Edward C Sherer; Mikhail Y Reibarkh
Journal:  J Comput Aided Mol Des       Date:  2019-05-03       Impact factor: 3.686

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