Literature DB >> 23767758

Selective detection of 5-formyl-2'-deoxycytidine in DNA using a fluorogenic hydroxylamine reagent.

Pu Guo1, Shengyong Yan, Jianlin Hu, Xiwen Xing, Changcheng Wang, Xiaowei Xu, Xiaoyu Qiu, Wen Ma, Chunjiang Lu, Xiaocheng Weng, Xiang Zhou.   

Abstract

Fluorogenic hydroxylamine reagents were used for detecting 5-fC through a labeling pathway. Chemical synthesis, HPLC, denaturing PAGE, and DNA MS were applied to testify that the probe reacted with 5-fC with oligodeoxynucleotide selectivity to achieve 5-fC detection conveniently and quantificationally with the method of fluorescence. The feasibility of fluorescently detecting 5-fC in a genome was also investigated.

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Year:  2013        PMID: 23767758     DOI: 10.1021/ol401290d

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  10 in total

1.  Pyrene-based quantitative detection of the 5-formylcytosine loci symmetry in the CpG duplex content during TET-dependent demethylation.

Authors:  Liang Xu; Ying-Chu Chen; Jenny Chong; Andrea Fin; Lisa S McCoy; Jun Xu; Chao Zhang; Dong Wang
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-27       Impact factor: 15.336

2.  5-Formylcytosine Yields DNA-Protein Cross-Links in Nucleosome Core Particles.

Authors:  Fengchao Li; Yingqian Zhang; Jing Bai; Marc M Greenberg; Zhen Xi; Chuanzheng Zhou
Journal:  J Am Chem Soc       Date:  2017-07-25       Impact factor: 15.419

3.  Highly sensitive analysis of low-molecular-mass aldehydes in beverages using a hydroxylamine reagent by high-performance liquid chromatography with fluorescence detection.

Authors:  Ran Liu; Long Mao; Zhaobing Guan; Chengsheng Wang; Jing Xu; Lujie Huang; Peike Wang; Guolin Xin; Rui Hu; Chuyu Zhang; Zihan Zhao; Yawei Lin; Xiaosong Hu
Journal:  Anal Bioanal Chem       Date:  2022-05-31       Impact factor: 4.142

4.  A Chemical Probe Targets DNA 5-Formylcytosine Sites and Inhibits TDG Excision, Polymerases Bypass, and Gene Expression.

Authors:  Liang Xu; Ying-Chu Chen; Satoshi Nakajima; Jenny Chong; Lanfeng Wang; Li Lan; Chao Zhang; Dong Wang
Journal:  Chem Sci       Date:  2014-02-01       Impact factor: 9.825

5.  Selective Chemical Labeling of Natural T Modifications in DNA.

Authors:  Robyn E Hardisty; Fumiko Kawasaki; Aleksandr B Sahakyan; Shankar Balasubramanian
Journal:  J Am Chem Soc       Date:  2015-05-12       Impact factor: 15.419

6.  Enrichment and fluorogenic labelling of 5-formyluracil in DNA.

Authors:  Chaoxing Liu; Yafen Wang; Xiong Zhang; Fan Wu; Wei Yang; Guangrong Zou; Qian Yao; Jiaqi Wang; Yuqi Chen; Shaoru Wang; Xiang Zhou
Journal:  Chem Sci       Date:  2017-04-05       Impact factor: 9.825

7.  Gene specific-loci quantitative and single-base resolution analysis of 5-formylcytosine by compound-mediated polymerase chain reaction.

Authors:  Yafen Wang; Chaoxing Liu; Xiong Zhang; Wei Yang; Fan Wu; Guangrong Zou; Xiaocheng Weng; Xiang Zhou
Journal:  Chem Sci       Date:  2018-03-19       Impact factor: 9.825

8.  Light-Activated Carbon Monoxide Prodrugs Based on Bipyridyl Dicarbonyl Ruthenium(II) Complexes.

Authors:  Stepan Geri; Tereza Krunclova; Olga Janouskova; Jiri Panek; Martin Hruby; Daniel Hernández-Valdés; Benjamin Probst; Roger A Alberto; Constantin Mamat; Manja Kubeil; Holger Stephan
Journal:  Chemistry       Date:  2020-08-13       Impact factor: 5.236

9.  Synthesis and bioimaging of a BODIPY-based fluorescence quenching probe for Fe3.

Authors:  Junqiang Leng; Xinyu Lan; Shuang Liu; Wenxuan Jia; Wenshuai Cheng; Jianbo Cheng; Zhenbo Liu
Journal:  RSC Adv       Date:  2022-08-02       Impact factor: 4.036

10.  Fluorogenic labeling and single-base resolution analysis of 5-formylcytosine in DNA.

Authors:  Chaoxing Liu; Yafen Wang; Wei Yang; Fan Wu; Weiwu Zeng; Zonggui Chen; Jinguo Huang; Guangrong Zou; Xiong Zhang; Shaoru Wang; Xiaocheng Weng; Zhiguo Wu; Yu Zhou; Xiang Zhou
Journal:  Chem Sci       Date:  2017-09-04       Impact factor: 9.825

  10 in total

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