Literature DB >> 23766328

Subangstrom resolution X-ray structure details aquaporin-water interactions.

Urszula Kosinska Eriksson1, Gerhard Fischer1, Rosmarie Friemann1, Giray Enkavi2, Emad Tajkhorshid2, Richard Neutze1.   

Abstract

Aquaporins are membrane channels that facilitate the flow of water across biological membranes. Two conserved regions are central for selective function: the dual asparagine-proline-alanine (NPA) aquaporin signature motif and the aromatic and arginine selectivity filter (SF). Here, we present the crystal structure of a yeast aquaporin at 0.88 angstrom resolution. We visualize the H-bond donor interactions of the NPA motif's asparagine residues to passing water molecules; observe a polarized water-water H-bond configuration within the channel; assign the tautomeric states of the SF histidine and arginine residues; and observe four SF water positions too closely spaced to be simultaneously occupied. Strongly correlated movements break the connectivity of SF waters to other water molecules within the channel and prevent proton transport via a Grotthuss mechanism.

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Year:  2013        PMID: 23766328      PMCID: PMC4066176          DOI: 10.1126/science.1234306

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  42 in total

1.  Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution.

Authors:  Y Zhou; J H Morais-Cabral; A Kaufman; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

2.  Energetic optimization of ion conduction rate by the K+ selectivity filter.

Authors:  J H Morais-Cabral; Y Zhou; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Enhancement of proton conductance by mutations of the selectivity filter of aquaporin-1.

Authors:  Hui Li; Hanning Chen; Christina Steinbronn; Binghua Wu; Eric Beitz; Thomas Zeuthen; Gregory A Voth
Journal:  J Mol Biol       Date:  2011-01-28       Impact factor: 5.469

4.  What really prevents proton transport through aquaporin? Charge self-energy versus proton wire proposals.

Authors:  Anton Burykin; Arieh Warshel
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

Review 5.  What makes an aquaporin a glycerol channel? A comparative study of AqpZ and GlpF.

Authors:  Yi Wang; Klaus Schulten; Emad Tajkhorshid
Journal:  Structure       Date:  2005-08       Impact factor: 5.006

6.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

7.  Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.

Authors:  Jeffery B Klauda; Richard M Venable; J Alfredo Freites; Joseph W O'Connor; Douglas J Tobias; Carlos Mondragon-Ramirez; Igor Vorobyov; Alexander D MacKerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

8.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  61 in total

1.  Crystal-clear water transport.

Authors:  Olivier Devuyst
Journal:  Perit Dial Int       Date:  2013 Nov-Dec       Impact factor: 1.756

2.  Osmotic water transport in aquaporins: evidence for a stochastic mechanism.

Authors:  Thomas Zeuthen; Magnus Alsterfjord; Eric Beitz; Nanna MacAulay
Journal:  J Physiol       Date:  2013-08-19       Impact factor: 5.182

3.  Activation and proton transport mechanism in influenza A M2 channel.

Authors:  Chenyu Wei; Andrew Pohorille
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

4.  Thermodynamic insight into spontaneous hydration and rapid water permeation in aquaporins.

Authors:  A Barati Farimani; N R Aluru; Emad Tajkhorshid
Journal:  Appl Phys Lett       Date:  2014-08-25       Impact factor: 3.791

5.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

6.  Aquaglyceroporin function in the malaria mosquito Anopheles gambiae.

Authors:  Kun Liu; Hitoshi Tsujimoto; Yuzheng Huang; Jason L Rasgon; Peter Agre
Journal:  Biol Cell       Date:  2016-10       Impact factor: 4.458

7.  1,3-propanediol binds deep inside the channel to inhibit water permeation through aquaporins.

Authors:  Lili Yu; Roberto A Rodriguez; L Laurie Chen; Liao Y Chen; George Perry; Stanton F McHardy; Chih-Ko Yeh
Journal:  Protein Sci       Date:  2016-02       Impact factor: 6.725

8.  Two aquaporins, multiple ways of assembly.

Authors:  Cintia Jozefkowicz; Florencia Scochera; Karina Alleva
Journal:  Channels (Austin)       Date:  2016-06-27       Impact factor: 2.581

9.  High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction.

Authors:  Jessica L Thomaston; Mercedes Alfonso-Prieto; Rahel A Woldeyes; James S Fraser; Michael L Klein; Giacomo Fiorin; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

10.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

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