Literature DB >> 22926812

Analysis of full-length sequences of two Citrus yellow mosaic badnavirus isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. Osbeck (Sweet Orange) from a nursery in India.

A M Anthony Johnson1, B K Borah, D V R Sai Gopal, I Dasgupta.   

Abstract

Citrus yellow mosaic badna virus (CMBV), a member of the Family Caulimoviridae, Genus Badnavirus is the causative agent of mosaic disease among Citrus species in southern India. Despite its reported prevalence in several citrus species, complete information on clear functional genomics or functional information of full-length genomes from all the CMBV isolates infecting citrus species are not available in publicly accessible databases. CMBV isolates from Rough Lemon and Sweet Orange collected from a nursery were cloned and sequenced. The analysis revealed high sequence homology of the two CMBV isolates with previously reported CMBV sequences implying that they represent new variants. Based on computational analysis of the predicted secondary structures, the possible functions of some CMBV proteins have been analyzed.

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Year:  2012        PMID： 22926812     DOI： 10.1007/s11262-012-0808-8

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  12 in total

1.  FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.

Authors:  J Shi; T L Blundell; K Mizuguchi
Journal:  J Mol Biol       Date:  2001-06-29       Impact factor: 5.469

2.  Detection of episomal banana streak badnavirus by IC-PCR.

Authors:  G Harper; G Dahal; G Thottappilly; R Hull
Journal:  J Virol Methods       Date:  1999-04       Impact factor: 2.014

3.  A comparison of four DNA extraction methods for the detection of Citrus yellow mosaic badna virus from two species of citrus using PCR and dot-blot hybridization.

Authors:  Basanta K Borah; A M Anthony Johnson; D V R Sai Gopal; Indranil Dasgupta
Journal:  J Virol Methods       Date:  2008-06-25       Impact factor: 2.014

4.  The ORF I and II proteins of Commelina yellow mottle virus are virion-associated.

Authors:  C P Cheng; B E Lockhart; N E Olszewski
Journal:  Virology       Date:  1996-09-15       Impact factor: 3.616

5.  Alternative structures of the cauliflower mosaic virus 35 S RNA leader: implications for viral expression and replication.

Authors:  M Hemmings-Mieszczak; G Steger; T Hohn
Journal:  J Mol Biol       Date:  1997-04-18       Impact factor: 5.469

6.  Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa.

Authors:  A D W Geering; M M Pooggin; N E Olszewski; B E L Lockhart; J E Thomas
Journal:  Arch Virol       Date:  2005-01-27       Impact factor: 2.574

7.  Regulation of CaMV 35 S RNA translation is mediated by a stable hairpin in the leader.

Authors:  M Hemmings-Mieszczak; G Steger; T Hohn
Journal:  RNA       Date:  1998-01       Impact factor: 4.942

8.  A short basic domain supports a nucleic acid-binding activity in the rice tungro bacilliform virus open reading frame 2 product.

Authors:  E Jacquot; M Keller; P Yot
Journal:  Virology       Date:  1997-12-22       Impact factor: 3.616

9.  A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses.

Authors:  Mikhail M Pooggin; Johannes Fütterer; Konstantin G Skryabin; Thomas Hohn
Journal:  J Gen Virol       Date:  1999-08       Impact factor: 3.891

10.  The open reading frame 2 product of cacao swollen shoot badnavirus is a nucleic acid-binding protein.

Authors:  E Jacquot; L S Hagen; M Jacquemond; P Yot
Journal:  Virology       Date:  1996-11-01       Impact factor: 3.616
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  5 in total

1.  Efficient immunodiagnosis of Citrus yellow mosaic virus using polyclonal antibodies with an expressed recombinant virion-associated protein.

Authors:  P Vignesh Kumar; Susheel Kumar Sharma; Narayan Rishi; Virendra Kumar Baranwal
Journal:  3 Biotech       Date:  2017-12-29       Impact factor: 2.406

2.  Complete genome sequencing of Piper yellow mottle virus infecting black pepper, betelvine, and Indian long pepper.

Authors:  K P Deeshma; A I Bhat
Journal:  Virus Genes       Date:  2014-10-21       Impact factor: 2.332

3.  Sequence diversity among badnavirus isolates infecting black pepper and related species in India.

Authors:  A I Bhat; Shina Sasi; K A Revathy; K P Deeshma; K V Saji
Journal:  Virusdisease       Date:  2014-07-10

Review 4.  Badnaviruses: The Current Global Scenario.

Authors:  Alangar Ishwara Bhat; Thomas Hohn; Ramasamy Selvarajan
Journal:  Viruses       Date:  2016-06-22       Impact factor: 5.048

Review 5.  Bacilliform DNA-containing plant viruses in the tropics: commonalities within a genetically diverse group.

Authors:  Basanta K Borah; Shweta Sharma; Ravi Kant; A M Anthony Johnson; Divi Venkata Ramana Saigopal; Indranil Dasgupta
Journal:  Mol Plant Pathol       Date:  2013-06-13       Impact factor: 5.663
  5 in total

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