Literature DB >> 23756906

Epistasis, complexity, and multifactor dimensionality reduction.

Qinxin Pan1, Ting Hu, Jason H Moore.   

Abstract

Genome-wide association studies (GWASs) and other high-throughput initiatives have led to an information explosion in human genetics and genetic epidemiology. Conversion of this wealth of new information about genomic variation to knowledge about public health and human biology will depend critically on the complexity of the genotype to phenotype mapping relationship. We review here computational approaches to genetic analysis that embrace, rather than ignore, the complexity of human health. We focus on multifactor dimensionality reduction (MDR) as an approach for modeling one of these complexities: epistasis or gene-gene interaction.

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Year:  2013        PMID: 23756906     DOI: 10.1007/978-1-62703-447-0_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

1.  A pharmacogenetic interaction analysis of bevacizumab with paclitaxel in advanced breast cancer patients.

Authors:  Luigi Coltelli; Giacomo Allegrini; Paola Orlandi; Chiara Finale; Andrea Fontana; Luna Chiara Masini; Marco Scalese; Giada Arrighi; Maria Teresa Barletta; Ermelinda De Maio; Marta Banchi; Elisabetta Fini; Patrizia Guidi; Giada Frenzilli; Sara Donati; Simona Giovannelli; Lucia Tanganelli; Barbara Salvadori; Lorenzo Livi; Icro Meattini; Ilaria Pazzagli; Marco Di Lieto; Mirco Pistelli; Virginia Casadei; Antonella Ferro; Samanta Cupini; Francesca Orlandi; Damiana Francesca; Giulia Lorenzini; Leonardo Barellini; Alfredo Falcone; Alessandro Cosimi; Guido Bocci
Journal:  NPJ Breast Cancer       Date:  2022-03-21

Review 2.  Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers.

Authors:  Li Shen; Paul M Thompson; Steven G Potkin; Lars Bertram; Lindsay A Farrer; Tatiana M Foroud; Robert C Green; Xiaolan Hu; Matthew J Huentelman; Sungeun Kim; John S K Kauwe; Qingqin Li; Enchi Liu; Fabio Macciardi; Jason H Moore; Leanne Munsie; Kwangsik Nho; Vijay K Ramanan; Shannon L Risacher; David J Stone; Shanker Swaminathan; Arthur W Toga; Michael W Weiner; Andrew J Saykin
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

3.  Bayesian reversible-jump for epistasis analysis in genomic studies.

Authors:  Marcio Balestre; Claudio Lopes de Souza
Journal:  BMC Genomics       Date:  2016-12-09       Impact factor: 3.969

Review 4.  Advances in the genome-wide association study of chronic hepatitis B susceptibility in Asian population.

Authors:  Bing Qiu; Wei Jiang; Mojtaba Olyaee; Kenji Shimura; Akihiro Miyakawa; Huijing Hu; Yongcui Zhu; Lixin Tang
Journal:  Eur J Med Res       Date:  2017-12-28       Impact factor: 2.175

5.  Roles of interacting stress-related genes in lifespan regulation: insights for translating experimental findings to humans.

Authors:  Anatoliy I Yashin; Deqing Wu; Konstantin Arbeev; Arseniy P Yashkin; Igor Akushevich; Olivia Bagley; Matt Duan; Svetlana Ukraintseva
Journal:  J Transl Genet Genom       Date:  2021-10-19

Review 6.  Sparse models for correlative and integrative analysis of imaging and genetic data.

Authors:  Dongdong Lin; Hongbao Cao; Vince D Calhoun; Yu-Ping Wang
Journal:  J Neurosci Methods       Date:  2014-09-09       Impact factor: 2.390

Review 7.  A review of multivariate analyses in imaging genetics.

Authors:  Jingyu Liu; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2014-03-26       Impact factor: 4.081

8.  Genotype distribution-based inference of collective effects in genome-wide association studies: insights to age-related macular degeneration disease mechanism.

Authors:  Hyung Jun Woo; Chenggang Yu; Kamal Kumar; Bert Gold; Jaques Reifman
Journal:  BMC Genomics       Date:  2016-08-30       Impact factor: 3.969

9.  Incorporating epistasis interaction of genetic susceptibility single nucleotide polymorphisms in a lung cancer risk prediction model.

Authors:  Michael W Marcus; Olaide Y Raji; Stephen W Duffy; Robert P Young; Raewyn J Hopkins; John K Field
Journal:  Int J Oncol       Date:  2016-04-25       Impact factor: 5.650

Review 10.  CHIMGEN: a Chinese imaging genetics cohort to enhance cross-ethnic and cross-geographic brain research.

Authors:  Qiang Xu; Lining Guo; Jingliang Cheng; Meiyun Wang; Zuojun Geng; Wenzhen Zhu; Bing Zhang; Weihua Liao; Shijun Qiu; Hui Zhang; Xiaojun Xu; Yongqiang Yu; Bo Gao; Tong Han; Zhenwei Yao; Guangbin Cui; Feng Liu; Wen Qin; Quan Zhang; Mulin Jun Li; Meng Liang; Feng Chen; Junfang Xian; Jiance Li; Jing Zhang; Xi-Nian Zuo; Dawei Wang; Wen Shen; Yanwei Miao; Fei Yuan; Su Lui; Xiaochu Zhang; Kai Xu; Long Jiang Zhang; Zhaoxiang Ye; Chunshui Yu
Journal:  Mol Psychiatry       Date:  2019-12-11       Impact factor: 15.992

  10 in total

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