Literature DB >> 25218561

Sparse models for correlative and integrative analysis of imaging and genetic data.

Dongdong Lin1, Hongbao Cao2, Vince D Calhoun3, Yu-Ping Wang4.   

Abstract

The development of advanced medical imaging technologies and high-throughput genomic measurements has enhanced our ability to understand their interplay as well as their relationship with human behavior by integrating these two types of datasets. However, the high dimensionality and heterogeneity of these datasets presents a challenge to conventional statistical methods; there is a high demand for the development of both correlative and integrative analysis approaches. Here, we review our recent work on developing sparse representation based approaches to address this challenge. We show how sparse models are applied to the correlation and integration of imaging and genetic data for biomarker identification. We present examples on how these approaches are used for the detection of risk genes and classification of complex diseases such as schizophrenia. Finally, we discuss future directions on the integration of multiple imaging and genomic datasets including their interactions such as epistasis.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Classification; Correspondence analysis; Imaging genetics; Integration; Sparse modeling

Mesh:

Year:  2014        PMID: 25218561      PMCID: PMC4194220          DOI: 10.1016/j.jneumeth.2014.09.001

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  76 in total

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Review 5.  Genetics of the connectome.

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Authors:  Omid Kohannim; Derrek P Hibar; Jason L Stein; Neda Jahanshad; Xue Hua; Priya Rajagopalan; Arthur W Toga; Clifford R Jack; Michael W Weiner; Greig I de Zubicaray; Katie L McMahon; Narelle K Hansell; Nicholas G Martin; Margaret J Wright; Paul M Thompson
Journal:  Front Neurosci       Date:  2012-08-06       Impact factor: 4.677

9.  Identification of gene pathways implicated in Alzheimer's disease using longitudinal imaging phenotypes with sparse regression.

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10.  A multiple kernel learning approach to perform classification of groups from complex-valued fMRI data analysis: application to schizophrenia.

Authors:  Eduardo Castro; Vanessa Gómez-Verdejo; Manel Martínez-Ramón; Kent A Kiehl; Vince D Calhoun
Journal:  Neuroimage       Date:  2013-11-10       Impact factor: 6.556

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  21 in total

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3.  Robust and Discriminative Brain Genome Association Study.

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4.  Structured Sparse Low-Rank Regression Model for Brain-Wide and Genome-Wide Associations.

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6.  Low-Rank Graph-Regularized Structured Sparse Regression for Identifying Genetic Biomarkers.

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7.  Feature Learning and Fusion of Multimodality Neuroimaging and Genetic Data for Multi-status Dementia Diagnosis.

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8.  Effective feature learning and fusion of multimodality data using stage-wise deep neural network for dementia diagnosis.

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9.  Brain-Wide Genome-Wide Association Study for Alzheimer's Disease via Joint Projection Learning and Sparse Regression Model.

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10.  Semi-supervised Hierarchical Multimodal Feature and Sample Selection for Alzheimer's Disease Diagnosis.

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