Literature DB >> 23756188

Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.

Ping Wu1, Xialin Zuo, Houliang Deng, Xiaoxia Liu, Li Liu, Aimin Ji.   

Abstract

Long noncoding RNAs (lncRNAs) have been attracting immense research interest, while only a handful of lncRNAs have been characterized thoroughly. Their involvement in the fundamental cellular processes including regulate gene expression at epigenetics, transcription, and post-transcription highlighted a central role in cell homeostasis. However, lncRNAs studies are still at a relatively early stage, their definition, conservation, functions, and action mechanisms remain fairly complicated. Here, we give a systematic and comprehensive summary of the existing knowledge of lncRNAs in order to provide a better understanding of this new studying field. lncRNAs play important roles in brain development, neuron function and maintenance, and neurodegenerative diseases are becoming increasingly evident. In this review, we also highlighted recent studies related lncRNAs in central nervous system (CNS) development and neurodegenerative diseases, including Alzheimer's disease (AD), Parkinson's disease (PD), Huntington's disease (HD) and amyotrophic lateral sclerosis (ALS), and elucidated some specific lncRNAs which may be important for understanding the pathophysiology of neurodegenerative diseases, also have the potential as therapeutic targets.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  5′-bromo-uridine immunoprecipitation chase followed by deep sequencing; AD; ALS; APP; Alzheimer's disease; Aβ40; Aβ42; BACE1; BC1; BC200 (BCYRN1); BDNF; BRIC–Seq; CHIRP-Seq; CNS; Ca(2+)/calmodulin-dependent protein kinase II; CaMKII; Camk2n1; DJ-1 (PARK7); DNA-binding domain protein 43; ENORs; Expression signature; FUS/TLS; GDNFOS; Gad1; Gene Nomenclature Committee; HAR1; HD; HGNCHOTAIRM1; HOX antisense intergenic RNA myeloid 1; HTTAS; HUGO; Huntingtin antisense; Huntington's disease; ISH; LRRK2; LTD; LTP; Malat1; NAT-Rad18; NO; NOSs; NTAs; Neurodegenerative disease; Neuron; Nitric oxide; Nkx2.2 AS; Nkx2.2 antisense; Noncoding RNA; Nrgn; ORF; PCG; PD; PINK1; PRC2; Parkinson disease protein 7; Parkinson's disease; RE1-silencing transcription factor/neuron-restrictive silencer factor; REST/NRSF; RIP-Chip; RNCR2; RNP immunoprecipitation-microarray; SAGE; SOX2; SRY (sex determining region Y)-box 2; Shh; Six3 opposite strand; Six3OS; Sox2 overlapping transcript; Sox2OT; TDP43TAR; TUG1; X-inactive specific transcript; Xist; amyloid precursor protein; amyloid-β-40; amyloid-β-42; amyotrophic lateral sclerosis; brain cytoplasmic RNA 1; brain derived neurotrophic factor; c-KLAN; calcium/calmodulin-dependent protein kinase II inhibitor 1; catRAPID; central nervous system; chromatin isolation by RNA purification followed by deep sequencing; combined knockdown and localization analysis of noncoding RNAs; eIF4A; eukaryotic initiation factor 4A; expressed noncoding regions; fast predictions of RNA and protein interactions and domains; fused in sarcoma/translated in liposarcoma; glial cell derived neurotrophic factor opposite strand; glutamate decarboxylase 1; human accelerated regions 1; iPSC; in situ hybridization; induced pluripotent stem cells; large intergenic noncoding RNAs; leucine-rich repeat kinase 2; lincRNAs; lncRNA; lncRNAs; long noncoding RNAs; long-term depression; long-term potentiation; metastasis-associated lung adenocarcinoma transcript 1; natural antisense RNAs; natural antisense-Rad 18; ncRNAs; neurogranin; nitric oxide synthases; noncoding RNAs; open reading frame; phosphatase and tensin homologue induced putative kinase 1; polycomb repressive complex 2; protein coding gene; retinal noncoding RNA 2; serial analysis of gene expression; sonic hedgehog; taurine upregulated gene 1; wilde type Cu/Zn superoxide dismutase; wtSOD1; β-site amyloid precursor protein-cleaving enzyme

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Substances:

Year:  2013        PMID: 23756188     DOI: 10.1016/j.brainresbull.2013.06.001

Source DB:  PubMed          Journal:  Brain Res Bull        ISSN: 0361-9230            Impact factor:   4.077


  130 in total

Review 1.  LncRNAs: emerging players in gene regulation and disease pathogenesis.

Authors:  Mina Kazemzadeh; Reza Safaralizadeh; Ayla Valinezhad Orang
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

2.  Down-regulation of Long Noncoding RNA MALAT1 Protects Hippocampal Neurons Against Excessive Autophagy and Apoptosis via the PI3K/Akt Signaling Pathway in Rats with Epilepsy.

Authors:  Qiang Wu; Xuewei Yi
Journal:  J Mol Neurosci       Date:  2018-06-01       Impact factor: 3.444

Review 3.  The Role of Long Noncoding RNAs in Neurodegenerative Diseases.

Authors:  Peixing Wan; Wenru Su; Yehong Zhuo
Journal:  Mol Neurobiol       Date:  2016-02-24       Impact factor: 5.590

4.  Long non-coding RNA normalisers in human brain tissue.

Authors:  Theo F J Kraus; Andrea Greiner; Virginie Guibourt; Hans A Kretzschmar
Journal:  J Neural Transm (Vienna)       Date:  2014-12-21       Impact factor: 3.575

Review 5.  LncRNAs: macromolecules with big roles in neurobiology and neurological diseases.

Authors:  Ye Chen; Jun Zhou
Journal:  Metab Brain Dis       Date:  2017-02-04       Impact factor: 3.584

6.  Transcriptome analysis demonstrates that long noncoding RNA is involved in the hypoxic response in Larimichthys crocea.

Authors:  Wei Liu; Xiaoxu Liu; Changwen Wu; Lihua Jiang
Journal:  Fish Physiol Biochem       Date:  2018-06-15       Impact factor: 2.794

7.  Investigation of Long Non-coding RNA Expression Profiles in the Substantia Nigra of Parkinson's Disease.

Authors:  Yaohui Ni; Hua Huang; Yaqin Chen; Maohong Cao; Hongzhi Zhou; Yuanyuan Zhang
Journal:  Cell Mol Neurobiol       Date:  2016-05-05       Impact factor: 5.046

Review 8.  The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.

Authors:  Lorena G Parlea; Blake A Sweeney; Maryam Hosseini-Asanjan; Craig L Zirbel; Neocles B Leontis
Journal:  Methods       Date:  2016-04-25       Impact factor: 3.608

9.  Aberrantly expressed long noncoding RNAs are involved in sevoflurane-induced developing hippocampal neuronal apoptosis: a microarray related study.

Authors:  Xiaohui Chen; Xue Zhou; Dihan Lu; Xiaoyu Yang; Zhibin Zhou; Xi Chen; Yanqing Chen; Wen He; Xia Feng
Journal:  Metab Brain Dis       Date:  2016-05-27       Impact factor: 3.584

Review 10.  RNA-binding proteins in neurodegeneration: Seq and you shall receive.

Authors:  Julia K Nussbacher; Ranjan Batra; Clotilde Lagier-Tourenne; Gene W Yeo
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

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