Literature DB >> 23752086

Implementing genomic medicine in pathology.

Eli S Williams1, Madhuri Hegde.   

Abstract

The finished sequence of the Human Genome Project, published 50 years after Watson and Crick's seminal paper on the structure of DNA, pushed human genetics into the public eye and ushered in the genomic era. A significant, if overlooked, aspect of the race to complete the genome was the technology that propelled scientists to the finish line. DNA sequencing technologies have become more standardized, automated, and capable of higher throughput. This technology has continued to grow at an astounding rate in the decade since the Human Genome Project was completed. Today, massively parallel sequencing, or next-generation sequencing (NGS), allows the detection of genetic variants across the entire genome. This ability has led to the identification of new causes of disease and is changing the way we categorize, treat, and manage disease. NGS approaches such as whole-exome sequencing and whole-genome sequencing are rapidly becoming an affordable genetic testing strategy for the clinical laboratory. One test can now provide vast amounts of health information pertaining not only to the disease of interest, but information that may also predict adult-onset disease, reveal carrier status for a rare disease and predict drug responsiveness. The issue of what to do with these incidental findings, along with questions pertaining to NGS testing strategies, data interpretation and storage, and applying genetic testing results into patient care, remains without a clear answer. This review will explore these issues and others relevant to the implementation of NGS in the clinical laboratory.

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Year:  2013        PMID: 23752086     DOI: 10.1097/PAP.0b013e3182977199

Source DB:  PubMed          Journal:  Adv Anat Pathol        ISSN: 1072-4109            Impact factor:   3.875


  12 in total

Review 1.  Practicing pathology in the era of big data and personalized medicine.

Authors:  Jiang Gu; Clive R Taylor
Journal:  Appl Immunohistochem Mol Morphol       Date:  2014-01

2.  The next generation of cancer management.

Authors:  Wayne W Grody
Journal:  Cancer Biol Med       Date:  2016-03       Impact factor: 4.248

3.  Predictive biomarkers and companion diagnostics. The future of immunohistochemistry: "in situ proteomics," or just a "stain"?

Authors:  Clive R Taylor
Journal:  Appl Immunohistochem Mol Morphol       Date:  2014-09

4.  Screening Strategies for Deafness Genes and Functional Outcomes in Cochlear Implant Patients.

Authors:  Eric Nisenbaum; Sandra Prentiss; Denise Yan; Aida Nourbakhsh; Molly Smeal; Meredith Holcomb; Ivette Cejas; Fred Telischi; Xue Zhong Liu
Journal:  Otol Neurotol       Date:  2021-01       Impact factor: 2.619

Review 5.  Navigating the rapids: the development of regulated next-generation sequencing-based clinical trial assays and companion diagnostics.

Authors:  Saumya Pant; Russell Weiner; Matthew J Marton
Journal:  Front Oncol       Date:  2014-04-17       Impact factor: 6.244

Review 6.  Advances in genetics: widening our understanding of prostate cancer.

Authors:  Angela C Pine; Flavia F Fioretti; Greg N Brooke; Charlotte L Bevan
Journal:  F1000Res       Date:  2016-06-27

Review 7.  Good Laboratory Standards for Clinical Next-Generation Sequencing Cancer Panel Tests.

Authors:  Jihun Kim; Woong-Yang Park; Nayoung K D Kim; Se Jin Jang; Sung-Min Chun; Chang-Ohk Sung; Jene Choi; Young-Hyeh Ko; Yoon-La Choi; Hyo Sup Shim; Jae-Kyung Won
Journal:  J Pathol Transl Med       Date:  2017-05-10

8.  A quick guide to genomics and bioinformatics training for clinical and public audiences.

Authors:  Michelle D Brazas; Fran Lewitter; Maria Victoria Schneider; Celia W G van Gelder; Patricia M Palagi
Journal:  PLoS Comput Biol       Date:  2014-04-10       Impact factor: 4.475

Review 9.  Unsolved challenges of clinical whole-exome sequencing: a systematic literature review of end-users' views.

Authors:  Gabrielle Bertier; Martin Hétu; Yann Joly
Journal:  BMC Med Genomics       Date:  2016-08-11       Impact factor: 3.063

10.  Next-generation sequencing approach for the diagnosis of human diseases: open challenges and new opportunities.

Authors:  Chiara Di Resta; Silvia Galbiati; Paola Carrera; Maurizio Ferrari
Journal:  EJIFCC       Date:  2018-04-30
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