Literature DB >> 23747917

Cell development obeys maximum Fisher information.

B Roy Frieden1, Robert A Gatenby.   

Abstract

Eukaryotic cell development has been optimized by natural selection to obey maximal intracellular flux of messenger proteins. This, in turn, implies maximum Fisher information on angular position about a target nuclear pore complex (NPR). The cell is simply modeled as spherical, with cell membrane (CM) diameter 10 micrometer and concentric nuclear membrane (NM) diameter 6 micrometer. The NM contains approximately 3000 nuclear pore complexes (NPCs). Development requires messenger ligands to travel from the CM-NPC-DNA target binding sites. Ligands acquire negative charge by phosphorylation, passing through the cytoplasm over Newtonian trajectories toward positively charged NPCs (utilizing positive nuclear localization sequences). The CM-NPC channel obeys maximized mean protein flux F and Fisher information I at the NPC. Therefore the first-order change in I = 0. But also, the 2nd-order change in I is likewise close to zero, indicating significant stability to environmental perturbations. Many predictions are confirmed, including the dominance of protein pathways of from 1-4 proteins, a 4 nm size for the EGFR protein and the flux value F approximately 10(16) proteins/m2-s. After entering the nucleus, each protein ultimately delivers its ligand information to a DNA target site with maximum probability, i.e. maximum Kullback-Liebler entropy H(KL). In a smoothness limit H(KL) --> I(DNA)/2, so that the total CM-NPC-DNA channel obeys maximum Fisher I. It is also shown that such maximum information --> a cell state far from thermodynamic equilibrium, one condition for life.

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Year:  2013        PMID: 23747917      PMCID: PMC4711766          DOI: 10.2741/e681

Source DB:  PubMed          Journal:  Front Biosci (Elite Ed)        ISSN: 1945-0494


  17 in total

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Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

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Review 4.  Dynamic nuclear pore complexes: life on the edge.

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Authors:  Katherine M Tyner; Raoul Kopelman; Martin A Philbert
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Review 6.  Regulation and epigenetic control of transcription at the nuclear periphery.

Authors:  Sara Ahmed; Jason H Brickner
Journal:  Trends Genet       Date:  2007-06-12       Impact factor: 11.639

Review 7.  Natural selection maximizes Fisher information.

Authors:  S A Frank
Journal:  J Evol Biol       Date:  2008-11-11       Impact factor: 2.411

8.  The critical roles of information and nonequilibrium thermodynamics in evolution of living systems.

Authors:  Robert A Gatenby; B Roy Frieden
Journal:  Bull Math Biol       Date:  2013-02-28       Impact factor: 1.758

9.  Charge as a selection criterion for translocation through the nuclear pore complex.

Authors:  Lucy J Colwell; Michael P Brenner; Katharina Ribbeck
Journal:  PLoS Comput Biol       Date:  2010-04-22       Impact factor: 4.475

10.  Coupling of receptor conformation and ligand orientation determine graded activity.

Authors:  John B Bruning; Alexander A Parent; German Gil; Min Zhao; Jason Nowak; Margaret C Pace; Carolyn L Smith; Pavel V Afonine; Paul D Adams; John A Katzenellenbogen; Kendall W Nettles
Journal:  Nat Chem Biol       Date:  2010-10-10       Impact factor: 15.040

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  3 in total

1.  Principle of maximum Fisher information from Hardy's axioms applied to statistical systems.

Authors:  B Roy Frieden; Robert A Gatenby
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-10-28

2.  Investigating Information Dynamics in Living Systems through the Structure and Function of Enzymes.

Authors:  Robert Gatenby; B Roy Frieden
Journal:  PLoS One       Date:  2016-05-05       Impact factor: 3.240

3.  Ion-Based Cellular Signal Transmission, Principles of Minimum Information Loss, and Evolution by Natural Selection.

Authors:  B Roy Frieden; Robert Gatenby
Journal:  Int J Mol Sci       Date:  2019-12-18       Impact factor: 5.923

  3 in total

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