Literature DB >> 23742747

A glimpse into past, present, and future DNA sequencing.

Marcos Morey1, Ana Fernández-Marmiesse, Daisy Castiñeiras, José M Fraga, María L Couce, José A Cocho.   

Abstract

Current advances in DNA sequencing technologies are dropping down sequencing cost while increasing throughput at a pace never shown before. Past-decade great milestones, as the establishment of a reference human genome (amongst others) and large-scale human genetic variation study in the 1000 Genome project are, in conjunction with the use of these techniques, triggering advances in many areas of basic and applied science. These tools, stored in and combined with the vast amount of information present in biological online databases are, with the use of automated interpretation and analysis tools, allowing the fulfillment of increasingly ambitious studies in many areas and also are democratizing the access to information, interpretation and technologies, being the first opportunity for researchers to assess the influence of genetics in complex events as multifactorial diseases, evolutionary studies, metagenomics, transcriptomics, etc. In this review, we present the current state of the art of these technologies, focusing on second generation sequencing, from sample and library preparation to sequencing chemistries and bioinformatic software available for final data analysis and visualisation, with its possible applications. We also make an overview of first and third generation, due to its historical importance and for being the upcoming future tools for genetic analysis, respectively.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DNA sequencing; Genome sequencing; High throughput genomics; Next generation sequencing; Sequencing technologies; Third generation sequencing

Mesh:

Year:  2013        PMID: 23742747     DOI: 10.1016/j.ymgme.2013.04.024

Source DB:  PubMed          Journal:  Mol Genet Metab        ISSN: 1096-7192            Impact factor:   4.797


  40 in total

1.  High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates.

Authors:  Cheng-Ying Jiang; Libing Dong; Jian-Kang Zhao; Xiaofang Hu; Chaohua Shen; Yuxin Qiao; Xinyue Zhang; Yapei Wang; Rustem F Ismagilov; Shuang-Jiang Liu; Wenbin Du
Journal:  Appl Environ Microbiol       Date:  2016-02-05       Impact factor: 4.792

Review 2.  Exome Sequencing in Clinical Hepatology.

Authors:  Sílvia Vilarinho; Pramod K Mistry
Journal:  Hepatology       Date:  2019-12       Impact factor: 17.425

Review 3.  Applications and challenges of next-generation sequencing in Brassica species.

Authors:  Lijuan Wei; Meili Xiao; Alice Hayward; Donghui Fu
Journal:  Planta       Date:  2013-09-24       Impact factor: 4.116

Review 4.  High-throughput sequencing technologies.

Authors:  Jason A Reuter; Damek V Spacek; Michael P Snyder
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

Review 5.  Next-Generation Sequencing Strategies.

Authors:  Shawn E Levy; Braden E Boone
Journal:  Cold Spring Harb Perspect Med       Date:  2019-07-01       Impact factor: 6.915

Review 6.  From local structure to a global framework: recognition of protein folds.

Authors:  Agnel Praveen Joseph; Alexandre G de Brevern
Journal:  J R Soc Interface       Date:  2014-04-16       Impact factor: 4.118

Review 7.  Renaissance in phytomedicines: promising implications of NGS technologies.

Authors:  Sonal Sharma; Neeta Shrivastava
Journal:  Planta       Date:  2016-03-22       Impact factor: 4.116

Review 8.  Influence of host immunoregulatory genes, ER stress and gut microbiota on the shared pathogenesis of inflammatory bowel disease and Type 1 diabetes.

Authors:  Altin Gjymishka; Roxana M Coman; Todd M Brusko; Sarah C Glover
Journal:  Immunotherapy       Date:  2013-12       Impact factor: 4.196

Review 9.  Next Generation Sequencing and Bioinformatics Analysis of Family Genetic Inheritance.

Authors:  Aquillah M Kanzi; James Emmanuel San; Benjamin Chimukangara; Eduan Wilkinson; Maryam Fish; Veron Ramsuran; Tulio de Oliveira
Journal:  Front Genet       Date:  2020-10-23       Impact factor: 4.599

Review 10.  Defining the Clinical Value of a Genomic Diagnosis in the Era of Next-Generation Sequencing.

Authors:  Natasha T Strande; Jonathan S Berg
Journal:  Annu Rev Genomics Hum Genet       Date:  2016-05-26       Impact factor: 8.929

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