Literature DB >> 23740937

A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.

Jose-Ezequiel Martin1, Shervin Assassi, Lina-Marcela Diaz-Gallo, Jasper C Broen, Carmen P Simeon, Ivan Castellvi, Esther Vicente-Rabaneda, Vicente Fonollosa, Norberto Ortego-Centeno, Miguel A González-Gay, Gerard Espinosa, Patricia Carreira, Mayte Camps, Jose M Sabio, Sandra D'alfonso, Madelon C Vonk, Alexandre E Voskuyl, Annemie J Schuerwegh, Alexander Kreuter, Torsten Witte, Gabriella Riemekasten, Nicolas Hunzelmann, Paolo Airo, Lorenzo Beretta, Raffaella Scorza, Claudio Lunardi, Jacob Van Laar, Meng May Chee, Jane Worthington, Arianne Herrick, Christopher Denton, Carmen Fonseca, Filemon K Tan, Frank Arnett, Xiaodong Zhou, John D Reveille, Olga Gorlova, Bobby P C Koeleman, Timothy R D J Radstake, Timothy Vyse, Maureen D Mayes, Marta E Alarcón-Riquelme, Javier Martin.   

Abstract

Systemic sclerosis (SSc) and systemic lupus erythematosus (SLE) are two archetypal systemic autoimmune diseases which have been shown to share multiple genetic susceptibility loci. In order to gain insight into the genetic basis of these diseases, we performed a pan-meta-analysis of two genome-wide association studies (GWASs) together with a replication stage including additional SSc and SLE cohorts. This increased the sample size to a total of 21,109 (6835 cases and 14,274 controls). We selected for replication 19 SNPs from the GWAS data. We were able to validate KIAA0319L (P = 3.31 × 10(-11), OR = 1.49) as novel susceptibility loci for SSc and SLE. Furthermore, we also determined that the previously described SLE susceptibility loci PXK (P = 3.27 × 10(-11), OR = 1.20) and JAZF1 (P = 1.11 × 10(-8), OR = 1.13) are shared with SSc. Supporting these new discoveries, we observed that KIAA0319L was overexpressed in peripheral blood cells of SSc and SLE patients compared with healthy controls. With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity.

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Year:  2013        PMID: 23740937      PMCID: PMC3766185          DOI: 10.1093/hmg/ddt248

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  43 in total

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7.  Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.

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Journal:  PLoS Genet       Date:  2011-03-03       Impact factor: 5.917

10.  Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.

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Journal:  PLoS Genet       Date:  2011-07-14       Impact factor: 5.917

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  52 in total

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Review 2.  Pathogenesis of Systemic Sclerosis.

Authors:  Debendra Pattanaik; Monica Brown; Bradley C Postlethwaite; Arnold E Postlethwaite
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Review 3.  Towards a Better Classification and Novel Therapies Based on the Genetics of Systemic Sclerosis.

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Review 5.  The Post-GWAS Era: How to Validate the Contribution of Gene Variants in Lupus.

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Review 6.  Moving towards a molecular taxonomy of autoimmune rheumatic diseases.

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7.  [Genome-associated studies in chronic inflammatory dermatoses].

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Review 8.  Unfolding the pathogenesis of scleroderma through genomics and epigenomics.

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