Literature DB >> 23740744

opm: an R package for analysing OmniLog(R) phenotype microarray data.

Lea A I Vaas1, Johannes Sikorski, Benjamin Hofner, Anne Fiebig, Nora Buddruhs, Hans-Peter Klenk, Markus Göker.   

Abstract

SUMMARY: opm is an R package designed to analyse multidimensional OmniLog® phenotype microarray (PM) data. opm provides management, visualization and statistical analysis of PM data, including curve-parameter estimation and discretization, dedicated and customizable plots, metadata management, automated generation of textual and tabular reports, mapping of substrates to databases, batch conversion of files and export to phylogenetic software in the YAML markup language. AVAILABILITY: opm is distributed under the GPL through the Comprehensive R Archive Network (http://cran.r-project.org/package=opm) along with a comprehensive manual and a user-friendly tutorial. Further information may be found at http://www.dsmz.de/research/microorganisms/projects/. CONTACT: johannes.sikorski@dsmz.de.

Mesh：

Year:  2013        PMID： 23740744     DOI： 10.1093/bioinformatics/btt291

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  78 in total

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