Literature DB >> 23740269

Reflects the coat protein variability of apple mosaic virus host preference?

L Grimová1, L Winkowska, P Ryšánek, P Svoboda, K Petrzik.   

Abstract

Apple mosaic virus (ApMV) is a widespread ssRNA virus which infects diverse species of Rosales. The phylogenetic analysis of complete capsid protein gene of the largest set of ApMV isolates discriminated two main clusters of isolates: one cluster correlates with Maloideae hosts and Trebouxia lichen algae hosts; a second with hop, Prunus, and other woody tree hosts. No correlation was found between clusters and geographic origin of virus isolates, and positive selection hypothesis in distinct hosts was not confirmed: in all virus populations, purifying selection had occurred. GGT→AAT substitution resulted in GlyAsn change inside the zinc-finger motif in the capsid protein was revealed specific for discrimination of the clusters and we hypothesise that could influence the host preference.

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Year:  2013        PMID: 23740269     DOI: 10.1007/s11262-013-0925-z

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  20 in total

1.  Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission.

Authors:  Elizabeth R Chare; Edward C Holmes
Journal:  J Gen Virol       Date:  2004-10       Impact factor: 3.891

2.  DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.

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3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

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Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

Review 4.  The hallmarks of "green" viruses: do plant viruses evolve differently from the others?

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Journal:  Infect Genet Evol       Date:  2011-03-05       Impact factor: 3.342

5.  The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviridae coat protein genes.

Authors:  R H Alrefai; P J Shiel; L L Domier; C J D'Arcy; P H Berger; S S Korban
Journal:  J Gen Virol       Date:  1994-10       Impact factor: 3.891

6.  Remarkable variability of apple mosaic virus capsid protein gene after nucleotide position 141.

Authors:  K Petrzik; O Lenz
Journal:  Arch Virol       Date:  2002-07       Impact factor: 2.574

7.  Prunus necrotic ringspot ilarvirus: nucleotide sequence of RNA3 and the relationship to other ilarviruses based on coat protein comparison.

Authors:  D Guo; E Maiss; G Adam; R Casper
Journal:  J Gen Virol       Date:  1995-05       Impact factor: 3.891

8.  Diversity of Apple mosaic virus Isolates in India Based on Coat Protein and Movement Protein Genes.

Authors:  Vijay Lakshmi; Vipin Hallan; Raja Ram; Nazeer Ahmed; A A Zaidi; A Varma
Journal:  Indian J Virol       Date:  2011-05-22

9.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937

10.  From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses.

Authors:  Rafael Sanjuán
Journal:  PLoS Pathog       Date:  2012-05-03       Impact factor: 6.823

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  2 in total

1.  Association of Apple necrotic mosaic virus (ApNMV) with mosaic disease in commercially grown cultivars of apple (Malus domestica Borkh) in India.

Authors:  Sajad Un Nabi; Virendra K Baranwal; Manoj K Yadav; Govind P Rao
Journal:  3 Biotech       Date:  2020-02-17       Impact factor: 2.406

2.  The Incidence and Genetic Diversity of Apple Mosaic Virus (ApMV) and Prune Dwarf Virus (PDV) in Prunus Species in Australia.

Authors:  Wycliff M Kinoti; Fiona E Constable; Narelle Nancarrow; Kim M Plummer; Brendan Rodoni
Journal:  Viruses       Date:  2018-03-19       Impact factor: 5.048

  2 in total

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