Literature DB >> 23733851

Autophagic processes in yeast: mechanism, machinery and regulation.

Fulvio Reggiori1, Daniel J Klionsky.   

Abstract

Autophagy refers to a group of processes that involve degradation of cytoplasmic components including cytosol, macromolecular complexes, and organelles, within the vacuole or the lysosome of higher eukaryotes. The various types of autophagy have attracted increasing attention for at least two reasons. First, autophagy provides a compelling example of dynamic rearrangements of subcellular membranes involving issues of protein trafficking and organelle identity, and thus it is fascinating for researchers interested in questions pertinent to basic cell biology. Second, autophagy plays a central role in normal development and cell homeostasis, and, as a result, autophagic dysfunctions are associated with a range of illnesses including cancer, diabetes, myopathies, some types of neurodegeneration, and liver and heart diseases. That said, this review focuses on autophagy in yeast. Many aspects of autophagy are conserved from yeast to human; in particular, this applies to the gene products mediating these pathways as well as some of the signaling cascades regulating it, so that the information we relate is relevant to higher eukaryotes. Indeed, as with many cellular pathways, the initial molecular insights were made possible due to genetic studies in Saccharomyces cerevisiae and other fungi.

Entities:  

Keywords:  autophagy; macroautophagy; membrane; organelle; protein degradation; protein trafficking; stress; vacuole

Mesh:

Year:  2013        PMID: 23733851      PMCID: PMC3664846          DOI: 10.1534/genetics.112.149013

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  211 in total

1.  Apg10p, a novel protein-conjugating enzyme essential for autophagy in yeast.

Authors:  T Shintani; N Mizushima; Y Ogawa; A Matsuura; T Noda; Y Ohsumi
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

2.  Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting.

Authors:  S V Scott; D C Nice; J J Nau; L S Weisman; Y Kamada; I Keizer-Gunnink; T Funakoshi; M Veenhuis; Y Ohsumi; D J Klionsky
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

Review 3.  Protein turnover via autophagy: implications for metabolism.

Authors:  Noboru Mizushima; Daniel J Klionsky
Journal:  Annu Rev Nutr       Date:  2007       Impact factor: 11.848

4.  Sequestration revisited: integrating traditional electron microscopy, de novo assembly and new results.

Authors:  Attila L Kovács; Zsolt Pálfia; Gábor Réz; Tibor Vellai; János Kovács
Journal:  Autophagy       Date:  2007-06-15       Impact factor: 16.016

5.  Pex14 is the sole component of the peroxisomal translocon that is required for pexophagy.

Authors:  Tim van Zutphen; Marten Veenhuis; Ida J van der Klei
Journal:  Autophagy       Date:  2007-09-24       Impact factor: 16.016

6.  The crystal structure of plant ATG12 and its biological implication in autophagy.

Authors:  Nobuo N Suzuki; Kohki Yoshimoto; Yuko Fujioka; Yoshinori Ohsumi; Fuyuhiko Inagaki
Journal:  Autophagy       Date:  2005-07-23       Impact factor: 16.016

7.  Hierarchy of Atg proteins in pre-autophagosomal structure organization.

Authors:  Kuninori Suzuki; Yuka Kubota; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Genes Cells       Date:  2007-02       Impact factor: 1.891

8.  Architecture of the Atg17 complex as a scaffold for autophagosome biogenesis.

Authors:  Michael J Ragusa; Robin E Stanley; James H Hurley
Journal:  Cell       Date:  2012-12-06       Impact factor: 41.582

9.  Recruitment of Atg9 to the preautophagosomal structure by Atg11 is essential for selective autophagy in budding yeast.

Authors:  Congcong He; Hui Song; Tomohiro Yorimitsu; Iryna Monastyrska; Wei-Lien Yen; Julie E Legakis; Daniel J Klionsky
Journal:  J Cell Biol       Date:  2006-12-18       Impact factor: 10.539

10.  Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy.

Authors:  Chinatsu Otomo; Zoltan Metlagel; Giichi Takaesu; Takanori Otomo
Journal:  Nat Struct Mol Biol       Date:  2012-12-02       Impact factor: 15.369

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  167 in total

1.  Structure of the Human Atg13-Atg101 HORMA Heterodimer: an Interaction Hub within the ULK1 Complex.

Authors:  Shiqian Qi; Do Jin Kim; Goran Stjepanovic; James H Hurley
Journal:  Structure       Date:  2015-08-20       Impact factor: 5.006

2.  Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response.

Authors:  Angel Guerra-Moreno; Marta Isasa; Meera K Bhanu; David P Waterman; Vinay V Eapen; Steven P Gygi; John Hanna
Journal:  J Biol Chem       Date:  2015-10-21       Impact factor: 5.157

3.  Dissecting the Structure-Function Relationship of a Fungicidal Peptide Derived from the Constant Region of Human Immunoglobulins.

Authors:  Tecla Ciociola; Thelma A Pertinhez; Laura Giovati; Martina Sperindè; Walter Magliani; Elena Ferrari; Rita Gatti; Tiziana D'Adda; Alberto Spisni; Stefania Conti; Luciano Polonelli
Journal:  Antimicrob Agents Chemother       Date:  2016-03-25       Impact factor: 5.191

4.  KIF1A/UNC-104 Transports ATG-9 to Regulate Neurodevelopment and Autophagy at Synapses.

Authors:  Andrea K H Stavoe; Sarah E Hill; David H Hall; Daniel A Colón-Ramos
Journal:  Dev Cell       Date:  2016-07-07       Impact factor: 12.270

Review 5.  The beginning of the end: how scaffolds nucleate autophagosome biogenesis.

Authors:  Robin E Stanley; Michael J Ragusa; James H Hurley
Journal:  Trends Cell Biol       Date:  2013-08-30       Impact factor: 20.808

6.  A functional link between NAD+ homeostasis and N-terminal protein acetylation in Saccharomyces cerevisiae.

Authors:  Trevor Croft; Christol James Theoga Raj; Michelle Salemi; Brett S Phinney; Su-Ju Lin
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.157

Review 7.  Mechanistic Insights into the Role of Atg11 in Selective Autophagy.

Authors:  Katarzyna Zientara-Rytter; Suresh Subramani
Journal:  J Mol Biol       Date:  2019-06-22       Impact factor: 5.469

Review 8.  Evolutionary biology through the lens of budding yeast comparative genomics.

Authors:  Souhir Marsit; Jean-Baptiste Leducq; Éléonore Durand; Axelle Marchant; Marie Filteau; Christian R Landry
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

9.  Detection of Saccharomyces cerevisiae Atg13 by western blot.

Authors:  Leonor Miller-Fleming; Heesun Cheong; Pedro Antas; Daniel J Klionsky
Journal:  Autophagy       Date:  2014-01-09       Impact factor: 16.016

10.  Mechanism of liponecrosis, a distinct mode of programmed cell death.

Authors:  Vincent R Richard; Adam Beach; Amanda Piano; Anna Leonov; Rachel Feldman; Michelle T Burstein; Pavlo Kyryakov; Alejandra Gomez-Perez; Anthony Arlia-Ciommo; Stefanie Baptista; Cory Campbell; Daniel Goncharov; Sonia Pannu; Dimitri Patrinos; Behnaz Sadri; Veronika Svistkova; Andrew Victor; Vladimir I Titorenko
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

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