Literature DB >> 23726790

Using next-generation sequencing as a genetic diagnostic tool in rare autosomal recessive neurologic Mendelian disorders.

Zhao Chen1, Jun-Ling Wang, Bei-Sha Tang, Zhan-Fang Sun, Yu-Ting Shi, Lu Shen, Li-Fang Lei, Xiao-Ming Wei, Jing-Jing Xiao, Zheng-Mao Hu, Qian Pan, Kun Xia, Qing-Yan Zhang, Mei-Zhi Dai, Yu Liu, Tetsuo Ashizawa, Hong Jiang.   

Abstract

Next-generation sequencing was used to investigate 9 rare Chinese pedigrees with rare autosomal recessive neurologic Mendelian disorders. Five probands with ataxia-telangectasia and 1 proband with chorea-acanthocytosis were analyzed by targeted gene sequencing. Whole-exome sequencing was used to investigate 3 affected individuals with Joubert syndrome, nemaline myopathy, or spastic ataxia Charlevoix-Saguenay type. A list of known and novel candidate variants was identified for each causative gene. All variants were genetically verified by Sanger sequencing or quantitative polymerase chain reaction with the strategy of disease segregation in related pedigrees and healthy controls. The advantages of using next-generation sequencing to diagnose rare autosomal recessive neurologic Mendelian disorders characterized by genetic and phenotypic heterogeneity are demonstrated. A genetic diagnostic strategy combining the use of targeted gene sequencing and whole-exome sequencing with the aid of next-generation sequencing platforms has shown great promise for improving the diagnosis of neurologic Mendelian disorders.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Autosomal recessive; Exome sequencing; Genetic diagnostic strategy; Neurologic Mendelian disorders; Targeted gene sequencing

Mesh:

Year:  2013        PMID: 23726790     DOI: 10.1016/j.neurobiolaging.2013.04.029

Source DB:  PubMed          Journal:  Neurobiol Aging        ISSN: 0197-4580            Impact factor:   4.673


  12 in total

Review 1.  A novel homozygous SACS mutation identified by whole exome sequencing-genotype phenotype correlations of all published cases.

Authors:  Georgia Xiromerisiou; Katerina Dadouli; Chrysoula Marogianni; Antonios Provatas; Panagiotis Ntellas; Dimitrios Rikos; Pantelis Stathis; Despina Georgouli; Gedeon Loules; Maria Zamanakou; Georgios M Hadjigeorgiou
Journal:  J Mol Neurosci       Date:  2019-11-07       Impact factor: 3.444

2.  Practices and views of neurologists regarding the use of whole-genome sequencing in clinical settings: a web-based survey.

Authors:  Iris Jaitovich Groisman; Thierry Hurlimann; Amir Shoham; Béatrice Godard
Journal:  Eur J Hum Genet       Date:  2017-05-10       Impact factor: 4.246

Review 3.  Next generation sequencing in cardiomyopathy: towards personalized genomics and medicine.

Authors:  Amitabh Biswas; V R Rao; Sandeep Seth; S K Maulik
Journal:  Mol Biol Rep       Date:  2014-08       Impact factor: 2.316

4.  Exome sequencing in the clinical diagnosis of sporadic or familial cerebellar ataxia.

Authors:  Brent L Fogel; Hane Lee; Joshua L Deignan; Samuel P Strom; Sibel Kantarci; Xizhe Wang; Fabiola Quintero-Rivera; Eric Vilain; Wayne W Grody; Susan Perlman; Daniel H Geschwind; Stanley F Nelson
Journal:  JAMA Neurol       Date:  2014-10       Impact factor: 18.302

5.  Exome sequencing reveals a nebulin nonsense mutation in a dog model of nemaline myopathy.

Authors:  Jacquelyn M Evans; Melissa L Cox; Jonathan Huska; Frank Li; Luis Gaitero; Ling T Guo; Margaret L Casal; Henk L Granzier; G Diane Shelton; Leigh Anne Clark
Journal:  Mamm Genome       Date:  2016-05-23       Impact factor: 2.957

6.  Targeted Next-Generation Sequencing Revealed Novel Mutations in Chinese Ataxia Telangiectasia Patients: A Precision Medicine Perspective.

Authors:  Zhao Chen; Wei Ye; Zhe Long; Dongxue Ding; Huirong Peng; Xuan Hou; Rong Qiu; Kun Xia; Beisha Tang; Hong Jiang
Journal:  PLoS One       Date:  2015-10-06       Impact factor: 3.240

Review 7.  Neuroacanthocytosis in china: a review of published reports.

Authors:  Jia Liu; Benedikt Bader; Adrian Danek
Journal:  Tremor Other Hyperkinet Mov (N Y)       Date:  2014-10-31

8.  A novel COL4A5 mutation identified in a Chinese Han family using exome sequencing.

Authors:  Xiaofei Xiu; Jinzhong Yuan; Xiong Deng; Jingjing Xiao; Hongbo Xu; Zhaoyang Zeng; Liping Guan; Fengping Xu; Sheng Deng
Journal:  Biomed Res Int       Date:  2014-07-06       Impact factor: 3.411

9.  Exploring neurologists' perspectives on the return of next generation sequencing results to their patients: a needed step in the development of guidelines.

Authors:  Thierry Hurlimann; Iris Jaitovich Groisman; Béatrice Godard
Journal:  BMC Med Ethics       Date:  2018-09-29       Impact factor: 2.652

Review 10.  Review of Ocular Manifestations of Joubert Syndrome.

Authors:  Stephanie F Wang; Tia J Kowal; Ke Ning; Euna B Koo; Albert Y Wu; Vinit B Mahajan; Yang Sun
Journal:  Genes (Basel)       Date:  2018-12-04       Impact factor: 4.096

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