| Literature DB >> 23723980 |
Baodong Qin1, Jiaqi Wang, Yan Liang, Zaixing Yang, Renqian Zhong.
Abstract
OBJECTIVE: Previous studies have evaluated the associations of TNF-α, IL-10 gene polymorphisms and susceptibility to pSS, but the results remained controversial. To assess the associations between TNF-α-308, IL-10-1082, -819, -592 polymorphisms and pSS risk, a meta-analysis was conducted.Entities:
Mesh:
Substances:
Year: 2013 PMID: 23723980 PMCID: PMC3661073 DOI: 10.1371/journal.pone.0063401
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristic of the 7 studies about the association between IL-10 polymorphisms and risk of pSS included in the meta-analysis.
| Author | Year | Country | Ethnicity | Case/Control | Age | Women/Men┬ | Criteria | Genotyping Method |
| Genotype frequency | Alleles or Haplotypes Frequency | |||
| pSS | Control | pSS | Control | |||||||||||
| Hulkkonen | 2001 | Finland | Caucasian | 62/400 | 60±11 | 60/2 | Californian | PCR-RFLP | GCC/GCC | 16 | 77 | GCC | 0.524 | 0.429 |
| J, et al | Criteria | GCC/ACC | 15 | 126 | ||||||||||
| GCC/ATA | 18 | 63 | ACC | 0.258 | 0.351 | |||||||||
| ACC/ACC | 5 | 46 | ||||||||||||
| ACC/ATA | 7 | 63 | ATA | 0.218 | 0.22 | |||||||||
| ATA/ATA | 1 | 25 | ||||||||||||
| Font | 2002 | Spain | Caucasian | 63/150 | 57 | 59/4 | European | PCR-RFLP | GCC/GCC | 13 | 21 | GCC | 0.484 | 0.343 |
| J, et al | (20–83) | community | GCC/ACC | 17 | 45 | |||||||||
| diagnostic | GCC/ATA | 18 | 16 | ACC | 0.246 | 0.387 | ||||||||
| Criteria | ACC/ACC | 2 | 18 | |||||||||||
| In 1996 | ACC/ATA | 10 | 35 | ATA | 0.27 | 0.27 | ||||||||
| ATA/ATA | 3 | 15 | ||||||||||||
| Origuchi | 2003 | Japan | Asian | 47/107 | NS | NS | NS | NS | GCC/GCC | 0 | 0 | GCC | 0.085 | 0.065 |
| T, et al | GCC/ACC | 1 | 4 | |||||||||||
| GCC/ATA | 7 | 10 | ACC | 0.181 | 0.285 | |||||||||
| ACC/ACC | 1 | 6 | ||||||||||||
| ACC/ATA | 14 | 45 | ATA | 0.734 | 0.65 | |||||||||
| ATA/ATA | 24 | 42 | ||||||||||||
| Gottenberg | 2003 | France | Caucasian | 129/96 | 56±13 | 115/14 | America - | PCR-RFLP | GCC/GCC | 27 | 20 | GCC | 0.442 | 0.396 |
| JE, et al | European | GCC/ACC | 30 | 15 | ||||||||||
| Consensus | GCC/ATA | 30 | 21 | ACC | 0.31 | 0.302 | ||||||||
| criteria | ACC/ACC | 13 | 13 | |||||||||||
| ACC/ATA | 24 | 17 | ATA | 0.248 | 0.302 | |||||||||
| ATA/ATA | 5 | 10 | ||||||||||||
| Marka | 2005 | USA | Caucasian | 99/135 | 55.6±11.8 | 97/2 | America - | PCR-RFLP | −1082 A/G | −1082 A/G | ||||
| M, et al | European | AA | 33 | 38 | A | 0.601 | 0.5741 | |||||||
| Consensus | AG | 53 | 79 | |||||||||||
| criteria | GG | 13 | 18 | G | 0.399 | 0.4259 | ||||||||
| Willeke | 2008 | Germany | Caucasian | 111/145 | 54.9±14.1 | 101/10 | America - | PCR-RFLP | – | – | – | −1082 A/G | ||
| P, et al | European | – | – | – | A | 0.496 | 0.516 | |||||||
| Consensus | – | – | – | G | 0.504 | 0.484 | ||||||||
| criteria | – | – | – | −819 C/T | ||||||||||
| – | – | – | C | 0.774 | 0.789 | |||||||||
| – | – | – | T | 0.226 | 0.211 | |||||||||
| – | – | – | −592 A/G | |||||||||||
| – | – | – | A | 0.774 | 0.789 | |||||||||
| – | – | – | G | 0.226 | 0.211 | |||||||||
| Limaye | 2000 | Australia | Caucasian | 165/108 | NS | NS | NS | NS | – | – | – | GCC | 0.476 | 0.49 |
| V, et al | – | – | – | ACC | 0.322 | 0.286 | ||||||||
| – | – | – | ATA | 0.203 | 0.224 | |||||||||
NS: None Stated.
┬:only the number of female and male pSS patients in these studies.
“GCC”, “ACC”, “ATA” indicated G/A at −1082, C/T at −819, and C/A at −592 of the IL-10 gene.
Mean year of pSS patients is 57, ranged 20–83 year in this study.
Characteristics of articles included in the meta-analysis of TNF-α –308 polymorphisms and susceptibility to pSS.
| Author | Country Year | Ethnicity | Case/Control | Age | Women/Men┬ | Criteria | Genotyping Method | Genotype | Genotype frequency | “A” allele frequency | ||
| pSS | Control | pSS | Control | |||||||||
| Correa PA, et al | Colombia 2005 | Caucasian | 67/430 | 49±13 | 67/0 | America - European Consensus criteria | PCR | AAAGGG | 13432 | 587338 | 0.27 | 0.11 |
| Gottenberg JE, et al | France 2003 | Caucasian | 129/96 | 56±13 | 115/14 | America - European Consensus criteria | PCR | AAAGGG | 95070 | 31677 | 0.26 | 0.11 |
| Bolstad AL, et al | Norway 2012/Sweden | Caucasian | 527/532 | 57.9±13.2 | 487/40 | American - European Consensus Criteria | Genotyping Assay | AAAGGG | – | – | 0.34 | 0.20 |
┬:only the number of female and male pSS patients in these studies.
Figure 1Forest plots for the association between TNF-α-308 “A” allele, IL-10-1082 “G” allele, genotype “GCC/ATA” and pSS risk in the overall population.
(Meta-analyses with the fixed-effects model).
Meta-analysis of associations between IL-10 polymorphisms and pSS using the additive, dominant, recessive Model.
| SNP | Genotype | Additive Model | Dominant Model | Recessive Model | ||||||||||||
| OR with 95%CI | Q test | I2 | Begg’s test | Egger’stest | OR with 95%CI | Q test | I2 | Begg’s test | Egger’s test | OR with 95%CI | Q test | I2 | Begg’s test | Egger’s test | ||
| −1082 | GG | |||||||||||||||
| AG | 1.13 (0.91,1.41) | 0.044 | 59.2% | 1 | 0.714 | 1.16 (0.99,1.34) | 0.048 | 58.40% | 1 | 0.799 | 0.88 (0.73,1.07) | 0 | 84.6% | 0.089 | 0.057 | |
| AxA | 1.47 (0.99,2.18) | 0.025 | 68% | 0.308 | 0.278 | |||||||||||
| −819 | CC | |||||||||||||||
| TC | 1.12 (0.96,1.31) | 0.704 | 0 | 0.308 | 0.58 | 1.09 (0.94,1.25) | 0.002 | 80.10% | 0.734 | 0.227 | 1.04 (0.92,1.18) | 0.719 | 0 | 0.734 | 0.88 | |
| TT | 0.57 (0.18,1.89) | 0 | 84.5% | 0.734 | 0.041 | |||||||||||
| −592 | CC | |||||||||||||||
| AC | 1.12 (0.96,1.31) | 0.704 | 0 | 0.308 | 0.58 | 1.09 (0.94,1.25) | 0.002 | 80.10% | 0.734 | 0.227 | 1.04 (0.92,1.18) | 0.719 | 0 | 0.734 | 0.88 | |
| AA | 0.57 (0.18,1.89) | 0 | 84.5% | 0.734 | 0.041 | |||||||||||
Meta-analysis of association between Haplotypes (GCC, ACC, ATA) and pSS risk.
| Haplotype | Haplotype carrier rate | Haplotype Frequency | ||||||||
| OR with 95%CI | Heterogeneity | Publication bias | OR with 95%CI | Heterogeneity | Publication bias | |||||
| Q test | I2 test | Begg’stest | Egger’stest | Q test | I2 test | Begg’s test | Egger’s test | |||
| GCC | 1.18 (1.02,1.37) | 0.911 | 0 | 0.734 | 0.543 | 1.10 (0.98,1.23) | 0.599 | 0 | 0.462 | 0.485 |
| ACC | 0.87 (0.73,1.04) | 0.476 | 0 | 0.089 | 0.375 | 0.88 (0.76,1.02) | 0.191 | 34.6 | 0.086 | 0.108 |
| ATA | 1.04 (0.89,1.22) | 0.898 | 0 | 1 | 0.865 | 0.97 (0.85,1.12) | 0.826 | 0 | 1 | 0.266 |