Literature DB >> 23723927

(4S)-4-[(R)-Chloro-(4-nitro-phen-yl)meth-yl]-1,3-oxazolidin-2-one.

V Gaumet1, C Denis, M Madesclaire, V P Zaitsev.   

Abstract

In the title compound, C10H9ClN2O4, the oxazolidinone ring adopts a near-planar conformation, with mean and maximum deviations of 0.0204 (8) and 0.0328 (8) Å, respectively. The nitro group is twisted slightly from the plane of the benzene ring, making a dihedral angle of 6.79 (3)°. The dihedral angle between the mean oxazolidinone plane and the benzene ring is 56.21 (3)°. In the crystal, N-H⋯O hydrogen bonds and N-O⋯π inter-actions [O⋯centroid distances = 3.478 (1) and 3.238 (1) Å] dominate the packing, forming infinite zigzag chains along the b-axis direction. Neighbouring chains are linked together through C-H⋯O and C-H⋯Cl inter-actions. The absolute configuration of the two stereogenic centres was determined using the anomalous dispersion of the Cl atom.

Entities:  

Year:  2013        PMID: 23723927      PMCID: PMC3648307          DOI: 10.1107/S1600536813010398

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of oxazolidinone derivatives, see: Michalska et al. (2012 ▶); Mathur et al. (2013 ▶); Jindal et al. (2013 ▶). For related structures, see: Bach et al. (2001 ▶); Tsui et al. (2013 ▶). For detailed of the synthesis, see: Madesclaire et al. (2013 ▶).

Experimental

Crystal data

C10H9ClN2O4 M = 256.64 Monoclinic, a = 7.2372 (1) Å b = 6.6726 (1) Å c = 11.7126 (2) Å β = 106.715 (1)° V = 541.71 (1) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 296 K 0.52 × 0.49 × 0.34 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.915, T max = 1.000 12895 measured reflections 6114 independent reflections 5384 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.06 6114 reflections 158 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.44 e Å−3 Absolute structure: Flack (1983 ▶), 2348 Friedel pairs Flack parameter: −0.03 (3) Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813010398/kp2451sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010398/kp2451Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010398/kp2451Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9ClN2O4F(000) = 264
Mr = 256.64Dx = 1.573 Mg m3
Monoclinic, P21Melting point: 414 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 7.2372 (1) ÅCell parameters from 6817 reflections
b = 6.6726 (1) Åθ = 4.0–39.2°
c = 11.7126 (2) ŵ = 0.36 mm1
β = 106.715 (1)°T = 296 K
V = 541.71 (1) Å3Block prism, colourless
Z = 20.52 × 0.49 × 0.34 mm
Bruker APEXII CCD diffractometer6114 independent reflections
Radiation source: fine-focus sealed tube5384 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.014
φ and ω scansθmax = 41.1°, θmin = 4.2°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −11→13
Tmin = 0.915, Tmax = 1.000k = −12→10
12895 measured reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0548P)2 + 0.0254P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
6114 reflectionsΔρmax = 0.33 e Å3
158 parametersΔρmin = −0.44 e Å3
1 restraintAbsolute structure: Flack (1983), 2348 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.03 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.27342 (14)1.09892 (14)0.00860 (7)0.04046 (18)
C2−0.09939 (17)1.16003 (16)0.07729 (9)0.03409 (18)
N3−0.04803 (15)1.04959 (14)0.17795 (9)0.0379 (2)
H30.035 (3)1.073 (4)0.234 (2)0.064 (7)*
C4−0.18727 (13)0.89934 (14)0.18369 (8)0.02872 (15)
H4−0.24380.92930.24840.034*
C5−0.33823 (17)0.9297 (2)0.06159 (11)0.0423 (2)
H5A−0.34600.81160.01210.051*
H5B−0.46460.95530.07160.051*
C6−0.09944 (12)0.68917 (13)0.19899 (7)0.02377 (12)
H6−0.05740.65640.12880.029*
C70.07040 (11)0.67131 (13)0.30890 (7)0.02336 (12)
C80.04894 (13)0.68896 (17)0.42314 (7)0.02948 (16)
H8−0.07360.70540.43230.035*
C90.20770 (14)0.68227 (17)0.52297 (7)0.03020 (16)
H90.19360.69310.59920.036*
C100.38832 (12)0.65896 (14)0.50598 (7)0.02706 (14)
C110.41443 (13)0.64207 (18)0.39412 (9)0.03193 (17)
H110.53740.62700.38550.038*
C120.25405 (13)0.64796 (18)0.29494 (8)0.02991 (16)
H120.26910.63630.21900.036*
N130.55799 (13)0.64956 (14)0.61094 (8)0.03406 (16)
O140.53442 (16)0.6452 (3)0.70939 (8)0.0556 (3)
O150.71821 (13)0.6472 (2)0.59423 (9)0.0488 (2)
O16−0.0129 (2)1.29556 (17)0.04888 (10)0.0528 (3)
Cl17−0.28820 (3)0.51760 (4)0.20713 (2)0.03492 (6)
U11U22U33U12U13U23
O10.0460 (4)0.0391 (4)0.0291 (3)0.0070 (3)−0.0005 (3)0.0078 (3)
C20.0433 (5)0.0272 (4)0.0324 (4)0.0033 (4)0.0119 (4)0.0008 (3)
N30.0380 (4)0.0299 (4)0.0352 (4)−0.0064 (3)−0.0062 (3)0.0051 (3)
C40.0271 (4)0.0286 (3)0.0258 (3)0.0025 (3)0.0002 (3)0.0024 (3)
C50.0337 (5)0.0426 (5)0.0383 (5)−0.0012 (4)−0.0092 (4)0.0089 (4)
C60.0232 (3)0.0272 (3)0.0201 (3)0.0001 (2)0.0049 (2)0.0002 (2)
C70.0223 (3)0.0262 (3)0.0209 (3)0.0023 (2)0.0051 (2)0.0020 (2)
C80.0229 (3)0.0433 (5)0.0221 (3)0.0036 (3)0.0063 (2)0.0017 (3)
C90.0285 (4)0.0399 (4)0.0210 (3)0.0030 (3)0.0052 (3)0.0024 (3)
C100.0248 (3)0.0277 (3)0.0250 (3)0.0037 (3)0.0013 (2)0.0025 (3)
C110.0225 (3)0.0415 (5)0.0311 (4)0.0062 (3)0.0067 (3)0.0010 (3)
C120.0256 (3)0.0409 (4)0.0239 (3)0.0057 (3)0.0083 (2)0.0008 (3)
N130.0301 (3)0.0315 (3)0.0330 (4)0.0043 (3)−0.0029 (3)0.0024 (3)
O140.0484 (5)0.0801 (8)0.0293 (4)0.0045 (5)−0.0032 (3)0.0063 (5)
O150.0270 (3)0.0631 (6)0.0483 (5)0.0074 (4)−0.0018 (3)0.0020 (5)
O160.0723 (7)0.0370 (4)0.0576 (6)−0.0051 (4)0.0321 (5)0.0057 (4)
Cl170.03212 (10)0.03645 (11)0.03473 (10)−0.00833 (9)0.00727 (7)−0.00087 (8)
O1—C21.3480 (15)C7—C121.3938 (12)
O1—C51.4310 (16)C7—C81.3956 (11)
C2—O161.2004 (15)C8—C91.3844 (13)
C2—N31.3487 (14)C8—H80.9300
N3—C41.4367 (14)C9—C101.3863 (13)
N3—H30.77 (2)C9—H90.9300
C4—C61.5288 (12)C10—C111.3811 (13)
C4—C51.5431 (13)C10—N131.4679 (11)
C4—H40.9800C11—C121.3866 (13)
C5—H5A0.9700C11—H110.9300
C5—H5B0.9700C12—H120.9300
C6—C71.5073 (11)N13—O141.2136 (14)
C6—Cl171.8058 (9)N13—O151.2303 (13)
C6—H60.9800
C2—O1—C5110.26 (8)C4—C6—H6109.0
O16—C2—O1122.33 (11)Cl17—C6—H6109.0
O16—C2—N3128.27 (12)C12—C7—C8119.65 (7)
O1—C2—N3109.38 (9)C12—C7—C6118.66 (7)
C2—N3—C4113.67 (9)C8—C7—C6121.59 (7)
C2—N3—H3126.1 (18)C9—C8—C7120.85 (8)
C4—N3—H3119.1 (18)C9—C8—H8119.6
N3—C4—C6111.84 (8)C7—C8—H8119.6
N3—C4—C5100.62 (8)C8—C9—C10118.05 (8)
C6—C4—C5112.87 (8)C8—C9—H9121.0
N3—C4—H4110.4C10—C9—H9121.0
C6—C4—H4110.4C11—C10—C9122.49 (8)
C5—C4—H4110.4C11—C10—N13118.76 (8)
O1—C5—C4105.81 (9)C9—C10—N13118.74 (8)
O1—C5—H5A110.6C10—C11—C12118.85 (8)
C4—C5—H5A110.6C10—C11—H11120.6
O1—C5—H5B110.6C12—C11—H11120.6
C4—C5—H5B110.6C11—C12—C7120.10 (8)
H5A—C5—H5B108.7C11—C12—H12119.9
C7—C6—C4112.46 (7)C7—C12—H12119.9
C7—C6—Cl17110.38 (6)O14—N13—O15123.18 (10)
C4—C6—Cl17107.00 (6)O14—N13—C10118.97 (9)
C7—C6—H6109.0O15—N13—C10117.84 (9)
C5—O1—C2—O16177.34 (12)Cl17—C6—C7—C8−53.58 (10)
C5—O1—C2—N3−3.94 (14)C12—C7—C8—C9−0.42 (15)
O16—C2—N3—C4179.45 (12)C6—C7—C8—C9−176.72 (9)
O1—C2—N3—C40.83 (14)C7—C8—C9—C100.44 (15)
C2—N3—C4—C6122.37 (10)C8—C9—C10—C11−0.12 (16)
C2—N3—C4—C52.29 (13)C8—C9—C10—N13−179.40 (9)
C2—O1—C5—C45.25 (13)C9—C10—C11—C12−0.22 (17)
N3—C4—C5—O1−4.35 (12)N13—C10—C11—C12179.06 (10)
C6—C4—C5—O1−123.69 (10)C10—C11—C12—C70.23 (17)
N3—C4—C6—C757.76 (10)C8—C7—C12—C110.08 (16)
C5—C4—C6—C7170.37 (8)C6—C7—C12—C11176.48 (10)
N3—C4—C6—Cl17179.12 (6)C11—C10—N13—O14−173.10 (13)
C5—C4—C6—Cl17−68.26 (9)C9—C10—N13—O146.21 (16)
C4—C6—C7—C12−110.50 (10)C11—C10—N13—O157.17 (15)
Cl17—C6—C7—C12130.09 (8)C9—C10—N13—O15−173.52 (11)
C4—C6—C7—C865.84 (11)
D—H···AD—HH···AD···AD—H···A
N3—H3···O15i0.77 (2)2.32 (2)3.095 (1)179 (2)
C6—H6···O16ii0.982.463.309 (2)145
C11—H11···Cl17iii0.932.833.582 (1)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O15i 0.77 (2)2.32 (2)3.095 (1)179 (2)
C6—H6⋯O16ii 0.982.463.309 (2)145
C11—H11⋯Cl17iii 0.932.833.582 (1)139

Symmetry codes: (i) ; (ii) ; (iii) .

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