Literature DB >> 23723892

2,4,6-Tri-amino-1,3,5-triazin-1-ium 3-(prop-2-eno-yloxy)propano-ate acrylic acid monosolvate monohydrate.

V Sangeetha1, N Kanagathara, G Chakkaravarthi, M K Marchewka, G Anbalagan.   

Abstract

The asymmetric unit of the title salt, C3H7N6 (+)·C6H7O4 (-)·C3H4O2·H2O, contains a 2,4,6-tri-amino-1,3,5-triazin-1-ium cation, a 3-(prop-2-eno-yloxy)propano-ate anion and acrylic acid and water solvent mol-ecules in a 1:1:1:1 ratio and with each species in a general position. In the crystal, the components are linked into a supra-molecular layer in the bc plane via a combination of O-H⋯O, N-H⋯N and N-H⋯O hydrogen bonding. The crystal studied was a non-merohedral twin, the minor component contribution being approximately 26%.

Entities:  

Year:  2013        PMID: 23723892      PMCID: PMC3648272          DOI: 10.1107/S1600536813009999

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to melamine derivatives, see: Krische & Lehn, (2000 ▶). For related structures, see: Kanagathara et al. (2012 ▶); Wang et al. (2007 ▶).

Experimental

Crystal data

C3H7N6 +·C6H7O4 −·C3H4O2·H2O M = 360.34 Triclinic, a = 4.84800 (1) Å b = 12.4200 (2) Å c = 14.8850 (3) Å α = 101.010 (1)° β = 92.652 (1)° γ = 94.117 (1)° V = 875.84 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 295 K 0.30 × 0.26 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.967, T max = 0.973 14152 measured reflections 14152 independent reflections 10635 reflections with I > 2σ(I) R int = 0.000

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.204 S = 1.07 14152 reflections 264 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813009999/tk5217sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009999/tk5217Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009999/tk5217Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H7N6+·C6H7O4·C3H4O2·H2OZ = 2
Mr = 360.34F(000) = 380
Triclinic, P1Dx = 1.366 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.84800 (1) ÅCell parameters from 3859 reflections
b = 12.4200 (2) Åθ = 2.0–25.0°
c = 14.8850 (3) ŵ = 0.11 mm1
α = 101.010 (1)°T = 295 K
β = 92.652 (1)°Block, colourless
γ = 94.117 (1)°0.30 × 0.26 × 0.24 mm
V = 875.84 (3) Å3
Bruker Kappa APEXII CCD diffractometer14152 independent reflections
Radiation source: fine-focus sealed tube10635 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
ω and φ scanθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→5
Tmin = 0.967, Tmax = 0.973k = −14→14
14152 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.204w = 1/[σ2(Fo2) + (0.1084P)2 + 0.3527P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
14152 reflectionsΔρmax = 0.40 e Å3
264 parametersΔρmin = −0.25 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.011 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3604 (3)−0.33906 (13)0.54291 (10)0.0388 (4)
C20.6285 (3)−0.25897 (13)0.45046 (10)0.0387 (4)
C30.3461 (3)−0.15225 (13)0.53714 (10)0.0376 (4)
C40.5541 (5)−0.4187 (2)0.14464 (17)0.0881 (7)
H4A0.6272−0.48660.12970.106*
H4B0.6184−0.36060.11790.106*
C50.3624 (4)−0.40507 (17)0.20271 (14)0.0658 (6)
H50.2942−0.33610.21600.079*
C60.2452 (4)−0.49050 (15)0.24902 (13)0.0525 (5)
C70.7769 (3)−0.16472 (14)0.73027 (11)0.0412 (4)
C80.5604 (3)−0.15879 (14)0.80048 (11)0.0461 (4)
H8A0.4012−0.20870.77460.055*
H8B0.6352−0.18440.85340.055*
C90.4644 (3)−0.04632 (15)0.83200 (12)0.0501 (5)
H9A0.4362−0.01050.78020.060*
H9B0.2907−0.05160.86130.060*
C100.6404 (4)0.12157 (16)0.92622 (12)0.0535 (5)
C110.8622 (4)0.17721 (19)0.99161 (14)0.0669 (6)
H111.01070.13831.00490.080*
C120.8592 (6)0.2792 (2)1.03178 (18)0.1037 (9)
H12A0.71220.31921.01920.124*
H12B1.00410.31231.07320.124*
N10.2537 (3)−0.24126 (11)0.57194 (9)0.0404 (3)
H1A0.128 (3)−0.2424 (18)0.6135 (11)0.074 (6)*
N20.5509 (3)−0.35026 (11)0.48202 (9)0.0421 (3)
N30.5367 (3)−0.15873 (11)0.47602 (8)0.0392 (3)
N40.2644 (3)−0.42345 (13)0.57764 (11)0.0536 (4)
H4C0.323 (3)−0.4922 (17)0.5560 (12)0.057 (5)*
H4D0.121 (3)−0.4097 (13)0.6191 (11)0.042 (4)*
N50.8195 (3)−0.26917 (14)0.38830 (9)0.0467 (4)
H5A0.899 (4)−0.3378 (19)0.3654 (14)0.081 (7)*
H5B0.862 (3)−0.2142 (14)0.3587 (11)0.042 (5)*
N60.2362 (3)−0.05879 (13)0.56754 (11)0.0492 (4)
H6A0.110 (4)−0.0621 (15)0.6107 (13)0.055 (5)*
H6B0.317 (4)−0.0013 (17)0.5495 (12)0.062 (6)*
O10.3317 (3)−0.58757 (11)0.21954 (9)0.0694 (4)
H10.2598−0.63200.24750.104*
O20.0843 (3)−0.47429 (11)0.30853 (10)0.0718 (4)
O30.8711 (2)−0.25670 (10)0.70356 (8)0.0532 (3)
O40.8527 (3)−0.08094 (10)0.70184 (8)0.0563 (3)
O50.6780 (2)0.01609 (10)0.89658 (8)0.0518 (3)
O60.4413 (3)0.16469 (12)0.90105 (11)0.0773 (4)
O71.0138 (4)0.14515 (14)0.74741 (12)0.0742 (4)
H7A0.915 (5)0.0873 (16)0.724 (2)0.141 (14)*
H7B1.130 (6)0.135 (4)0.787 (2)0.21 (2)*
U11U22U33U12U13U23
C10.0455 (9)0.0298 (10)0.0405 (9)0.0014 (7)0.0056 (7)0.0058 (7)
C20.0450 (9)0.0327 (10)0.0367 (8)0.0016 (7)0.0031 (7)0.0028 (7)
C30.0422 (9)0.0324 (10)0.0389 (8)0.0013 (7)0.0007 (7)0.0097 (7)
C40.115 (2)0.0604 (16)0.0961 (17)0.0067 (13)0.0356 (16)0.0270 (13)
C50.0868 (15)0.0412 (13)0.0705 (13)0.0073 (10)0.0062 (12)0.0123 (10)
C60.0622 (12)0.0352 (11)0.0585 (11)0.0059 (9)−0.0014 (9)0.0053 (9)
C70.0376 (9)0.0386 (11)0.0452 (9)0.0028 (8)0.0021 (7)0.0029 (8)
C80.0439 (10)0.0435 (11)0.0507 (10)0.0046 (8)0.0110 (8)0.0062 (8)
C90.0428 (10)0.0510 (12)0.0561 (11)0.0088 (8)0.0094 (8)0.0061 (9)
C100.0590 (12)0.0473 (13)0.0550 (11)0.0076 (9)0.0255 (9)0.0059 (9)
C110.0728 (14)0.0657 (16)0.0580 (12)0.0051 (11)0.0127 (10)−0.0007 (11)
C120.128 (2)0.075 (2)0.0941 (19)0.0066 (16)−0.0105 (17)−0.0134 (15)
N10.0478 (8)0.0316 (8)0.0426 (7)0.0014 (6)0.0086 (7)0.0090 (6)
N20.0524 (8)0.0292 (8)0.0444 (8)0.0025 (6)0.0112 (6)0.0048 (6)
N30.0469 (8)0.0289 (8)0.0430 (8)0.0043 (6)0.0098 (6)0.0076 (6)
N40.0719 (11)0.0323 (9)0.0606 (10)0.0060 (8)0.0244 (9)0.0134 (7)
N50.0638 (10)0.0354 (9)0.0443 (8)0.0083 (7)0.0221 (7)0.0100 (7)
N60.0562 (10)0.0324 (9)0.0628 (10)0.0106 (7)0.0243 (8)0.0117 (7)
O10.0963 (11)0.0413 (9)0.0760 (9)0.0149 (7)0.0341 (8)0.0146 (6)
O20.0886 (10)0.0496 (9)0.0828 (10)0.0199 (7)0.0371 (8)0.0139 (7)
O30.0568 (7)0.0376 (8)0.0657 (8)0.0089 (6)0.0222 (6)0.0053 (6)
O40.0680 (8)0.0412 (8)0.0633 (8)0.0059 (6)0.0269 (6)0.0132 (6)
O50.0562 (8)0.0462 (8)0.0506 (7)0.0119 (6)0.0054 (6)0.0005 (6)
O60.0733 (10)0.0545 (10)0.1014 (12)0.0216 (7)0.0028 (8)0.0034 (8)
O70.0988 (13)0.0528 (10)0.0763 (10)0.0053 (9)0.0210 (10)0.0227 (8)
C1—N41.320 (2)C8—H8B0.9700
C1—N21.3198 (19)C9—O51.451 (2)
C1—N11.356 (2)C9—H9A0.9700
C2—N51.335 (2)C9—H9B0.9700
C2—N21.344 (2)C10—O61.215 (2)
C2—N31.344 (2)C10—O51.329 (2)
C3—N61.321 (2)C10—C111.456 (3)
C3—N31.3225 (18)C11—C121.294 (3)
C3—N11.364 (2)C11—H110.9300
C4—C51.296 (3)C12—H12A0.9300
C4—H4A0.9300C12—H12B0.9300
C4—H4B0.9300N1—H1A0.889 (9)
C5—C61.467 (3)N4—H4C0.922 (19)
C5—H50.9300N4—H4D0.953 (15)
C6—O21.205 (2)N5—H5A0.97 (2)
C6—O11.308 (2)N5—H5B0.898 (18)
C7—O41.235 (2)N6—H6A0.911 (18)
C7—O31.2609 (19)N6—H6B0.88 (2)
C7—C81.511 (2)O1—H10.8200
C8—C91.500 (2)O7—H7A0.843 (10)
C8—H8A0.9700O7—H7B0.836 (10)
N4—C1—N2120.99 (15)O5—C9—H9B110.3
N4—C1—N1117.24 (15)C8—C9—H9B110.3
N2—C1—N1121.77 (14)H9A—C9—H9B108.5
N5—C2—N2116.22 (14)O6—C10—O5122.83 (18)
N5—C2—N3117.01 (15)O6—C10—C11125.0 (2)
N2—C2—N3126.76 (14)O5—C10—C11112.21 (17)
N6—C3—N3121.40 (15)C12—C11—C10122.1 (2)
N6—C3—N1116.79 (15)C12—C11—H11119.0
N3—C3—N1121.80 (14)C10—C11—H11119.0
C5—C4—H4A120.0C11—C12—H12A120.0
C5—C4—H4B120.0C11—C12—H12B120.0
H4A—C4—H4B120.0H12A—C12—H12B120.0
C4—C5—C6124.8 (2)C1—N1—C3119.00 (13)
C4—C5—H5117.6C1—N1—H1A114.6 (14)
C6—C5—H5117.6C3—N1—H1A126.4 (14)
O2—C6—O1122.40 (17)C1—N2—C2115.50 (13)
O2—C6—C5124.07 (18)C3—N3—C2115.15 (13)
O1—C6—C5113.53 (17)C1—N4—H4C119.3 (11)
O4—C7—O3123.29 (15)C1—N4—H4D116.1 (9)
O4—C7—C8119.37 (15)H4C—N4—H4D124.2 (15)
O3—C7—C8117.35 (15)C2—N5—H5A123.5 (12)
C9—C8—C7114.76 (15)C2—N5—H5B120.4 (10)
C9—C8—H8A108.6H5A—N5—H5B115.5 (16)
C7—C8—H8A108.6C3—N6—H6A114.9 (11)
C9—C8—H8B108.6C3—N6—H6B114.1 (12)
C7—C8—H8B108.6H6A—N6—H6B130.1 (17)
H8A—C8—H8B107.6C6—O1—H1109.5
O5—C9—C8107.26 (13)C10—O5—C9115.98 (13)
O5—C9—H9A110.3H7A—O7—H7B112 (4)
C8—C9—H9A110.3
C4—C5—C6—O2173.4 (2)N4—C1—N2—C2178.84 (15)
C4—C5—C6—O1−6.6 (3)N1—C1—N2—C2−0.7 (2)
O4—C7—C8—C9−2.2 (2)N5—C2—N2—C1−179.50 (14)
O3—C7—C8—C9177.86 (15)N3—C2—N2—C11.6 (2)
C7—C8—C9—O5−77.34 (18)N6—C3—N3—C2−179.36 (15)
O6—C10—C11—C122.7 (3)N1—C3—N3—C20.8 (2)
O5—C10—C11—C12−177.0 (2)N5—C2—N3—C3179.48 (14)
N4—C1—N1—C3−179.52 (15)N2—C2—N3—C3−1.6 (2)
N2—C1—N1—C30.0 (2)O6—C10—O5—C9−0.5 (2)
N6—C3—N1—C1−179.95 (14)C11—C10—O5—C9179.17 (14)
N3—C3—N1—C1−0.1 (2)C8—C9—O5—C10174.42 (13)
D—H···AD—HH···AD···AD—H···A
O7—H7A···O40.84 (1)2.05 (2)2.804 (2)149 (3)
O1—H1···O3i0.821.772.5872 (17)171
N1—H1A···O3ii0.89 (1)1.90 (1)2.7829 (17)175 (2)
N4—H4C···N2i0.922 (19)2.08 (2)2.995 (2)175 (16)
N4—H4D···O3ii0.953 (15)2.494 (16)3.295 (2)142 (12)
N4—H4D···O2iii0.953 (15)2.172 (15)2.850 (2)127 (12)
N5—H5A···O2iv0.97 (2)2.03 (2)3.001 (2)175 (17)
N5—H5B···O7v0.898 (18)2.031 (18)2.875 (2)156 (14)
N6—H6B···N3vi0.88 (2)2.17 (2)3.039 (2)169 (17)
O7—H7B···O6iv0.84 (1)2.17 (2)2.977 (3)161 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O7—H7A⋯O40.84 (1)2.05 (2)2.804 (2)149 (3)
O1—H1⋯O3i 0.821.772.5872 (17)171
N1—H1A⋯O3ii 0.89 (1)1.90 (1)2.7829 (17)175 (2)
N4—H4C⋯N2i 0.922 (19)2.08 (2)2.995 (2)175 (16)
N4—H4D⋯O3ii 0.953 (15)2.494 (16)3.295 (2)142 (12)
N4—H4D⋯O2iii 0.953 (15)2.172 (15)2.850 (2)127 (12)
N5—H5A⋯O2iv 0.97 (2)2.03 (2)3.001 (2)175 (17)
N5—H5B⋯O7v 0.898 (18)2.031 (18)2.875 (2)156 (14)
N6—H6B⋯N3vi 0.88 (2)2.17 (2)3.039 (2)169 (17)
O7—H7B⋯O6iv 0.84 (1)2.17 (2)2.977 (3)161 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Nitro-phenol-2,4,6-triamino-1,3,5-triazine-water (2/1/1).

Authors:  N Kanagathara; G Chakkaravarthi; M K Marchewka; S Gunasekaran; G Anbalagan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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